miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51551_pta-miR156a:pmrd
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 10 gatgacagaagatagagagcacatccgctcacatgccgggactctgcgtttgaggtgtat 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgacagaagatagagagcacatccgctcacatgccgggactctgcgtttgaggtgtat 60
Query: 70 gtggtctccatgattctgtcatc 92
|||||||||||||||||||||||
Sbjct: 61 gtggtctccatgattctgtcatc 83
>51552_pta-miR156b:pmrd
Length = 83
Score = 109 bits (55), Expect = 4e-25
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 10 gatgacagaagatagagagcacatccgctcacatgccgggactctgcgtttgaggtgtat 69
||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct: 1 gatgacagaagatagagagcacaaccgctcagatgccggcactctgcgtttgaggtgtat 60
Query: 70 gtggtctccatgattctgtcatc 92
||| |||| ||||| |||||||
Sbjct: 61 gtgctctcgttgattttgtcatc 83
>48696_mtr-miR156f:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcacatc 34
|||||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcacatc 29
>54774_vvi-miR156i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>54772_vvi-miR156g:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>54771_vvi-miR156f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>54570_smo-miR156b:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 4 tgacagaagatagagagcaca 24
>51600_ptc-miR156j:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>51599_ptc-miR156i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>51597_ptc-miR156g:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>48790_nta-miR157:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcaca 22
>48697_mtr-miR156h:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcaca 27
>48695_mtr-miR156e:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcaca 27
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcaca 22
>48642_han-miR157a:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcaca 22
>48631_gra-miR157b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcaca 26
>48630_gra-miR157a:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcaca 26
>48531_gma-miR156d:pmrd
Length = 151
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcaca 42
>48530_gma-miR156c:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 147 tgacagaagatagagagcaca 167
>46925_ath-miR157b:pmrd
Length = 132
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 20 tgacagaagatagagagcaca 40
>46924_ath-miR157a:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 5 tgacagaagatagagagcaca 25
>46862_aqc-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcaca 21
>46861_aqc-miR156a:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcaca 32
|||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcaca 21
>54920_zma-miR156j:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 cgatgacagaagatagagagcaca 32
||||||||||||| ||||||||||
Sbjct: 18 cgatgacagaagagagagagcaca 41
>54661_stu-miR157a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54534_sly-miR156c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54532_sly-miR156a:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51598_ptc-miR156h:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>48537_gma-miR157c:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 83 tgacagaagatagagagcac 64
>48532_gma-miR156e:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcac 41
>48393_bra-miR157a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 15 tgacagaagatagagagcac 34
>48384_bol-miR157a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 19 tgacagaagatagagagcac 38
>48337_bna-miR156b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 26 tgacagaagatagagagcac 45
>46927_ath-miR157d:pmrd
Length = 221
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43
>46926_ath-miR157c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagatagagagcac 31
||||||||||||||||||||
Sbjct: 25 tgacagaagatagagagcac 44
