miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51552_pta-miR156b:pmrd
          Length = 83

 Score =  165 bits (83), Expect = 7e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 8  gatgacagaagatagagagcacaaccgctcagatgccggcactctgcgtttgaggtgtat 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatgacagaagatagagagcacaaccgctcagatgccggcactctgcgtttgaggtgtat 60

                                 
Query: 68 gtgctctcgttgattttgtcatc 90
          |||||||||||||||||||||||
Sbjct: 61 gtgctctcgttgattttgtcatc 83




>51551_pta-miR156a:pmrd
          Length = 83

 Score =  109 bits (55), Expect = 4e-25
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                      
Query: 8  gatgacagaagatagagagcacaaccgctcagatgccggcactctgcgtttgaggtgtat 67
          ||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct: 1  gatgacagaagatagagagcacatccgctcacatgccgggactctgcgtttgaggtgtat 60

                                 
Query: 68 gtgctctcgttgattttgtcatc 90
          ||| ||||  ||||| |||||||
Sbjct: 61 gtggtctccatgattctgtcatc 83




>48675_lja-miR157a:pmrd
          Length = 58

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 tgacagaagatagagagcacaacc 33
          ||||||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcacaacc 25




>48530_gma-miR156c:pmrd
          Length = 185

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 10  tgacagaagatagagagcacaacc 33
           ||||||||||||||||||||||||
Sbjct: 147 tgacagaagatagagagcacaacc 170




>54920_zma-miR156j:pmrd
          Length = 125

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 7  cgatgacagaagatagagagcacaacc 33
          ||||||||||||| |||||||||||||
Sbjct: 18 cgatgacagaagagagagagcacaacc 44




>54771_vvi-miR156f:pmrd
          Length = 105

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 tgacagaagatagagagcacaac 32
          |||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaac 34




>54396_sbi-miR156d:pmrd
          Length = 125

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 8  gatgacagaagatagagagcacaacc 33
          |||||||||||| |||||||||||||
Sbjct: 19 gatgacagaagagagagagcacaacc 44




>48811_osa-miR156k:pmrd
          Length = 106

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 8  gatgacagaagatagagagcacaacc 33
          |||||||||||| |||||||||||||
Sbjct: 9  gatgacagaagagagagagcacaacc 34




>54774_vvi-miR156i:pmrd
          Length = 103

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>54772_vvi-miR156g:pmrd
          Length = 103

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>54570_smo-miR156b:pmrd
          Length = 112

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>52045_ptc-miRf10223-akr:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 4  tgacagaagatagagagcaca 24




>51600_ptc-miR156j:pmrd
          Length = 100

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>51599_ptc-miR156i:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>51597_ptc-miR156g:pmrd
          Length = 103

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32




>48790_nta-miR157:pmrd
          Length = 131

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcaca 22




>48697_mtr-miR156h:pmrd
          Length = 94

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcaca 27




>48696_mtr-miR156f:pmrd
          Length = 94

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcaca 27




>48695_mtr-miR156e:pmrd
          Length = 172

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcaca 27




>48642_han-miR157a:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcaca 22




>48631_gra-miR157b:pmrd
          Length = 91

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 6  tgacagaagatagagagcaca 26




>48630_gra-miR157a:pmrd
          Length = 101

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 6  tgacagaagatagagagcaca 26




>48531_gma-miR156d:pmrd
          Length = 151

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcaca 42




>46925_ath-miR157b:pmrd
          Length = 132

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 20 tgacagaagatagagagcaca 40




>46924_ath-miR157a:pmrd
          Length = 98

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 5  tgacagaagatagagagcaca 25




>46862_aqc-miR156b:pmrd
          Length = 83

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 1  tgacagaagatagagagcaca 21




>46861_aqc-miR156a:pmrd
          Length = 81

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 10 tgacagaagatagagagcaca 30
          |||||||||||||||||||||
Sbjct: 1  tgacagaagatagagagcaca 21




>54661_stu-miR157a:pmrd
          Length = 91

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>54534_sly-miR156c:pmrd
          Length = 83

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>54533_sly-miR156b:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>54532_sly-miR156a:pmrd
          Length = 100

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 2  tgacagaagatagagagcac 21




>52807_ptc-miRf10985-akr:pmrd
          Length = 87

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 3  tgacagaagatagagagcac 22




>51598_ptc-miR156h:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31




>48676_lja-miR157b:pmrd
          Length = 86

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 tgacagaagatagagagcacaacc 33
          |||||||||| |||||||||||||
Sbjct: 2  tgacagaagagagagagcacaacc 25




>48537_gma-miR157c:pmrd
          Length = 84

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 83 tgacagaagatagagagcac 64




>48532_gma-miR156e:pmrd
          Length = 124

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcac 41




>48529_gma-miR156b:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 tgacagaagatagagagcacaacc 33
          |||||||||| |||||||||||||
Sbjct: 21 tgacagaagagagagagcacaacc 44




>48393_bra-miR157a:pmrd
          Length = 149

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 15 tgacagaagatagagagcac 34




>48384_bol-miR157a:pmrd
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 7  tgacagaagatagagagcac 26




>48338_bna-miR156c:pmrd
          Length = 155

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 19 tgacagaagatagagagcac 38




>48337_bna-miR156b:pmrd
          Length = 208

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 26 tgacagaagatagagagcac 45




>46927_ath-miR157d:pmrd
          Length = 221

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43




>46926_ath-miR157c:pmrd
          Length = 217

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 10 tgacagaagatagagagcac 29
          ||||||||||||||||||||
Sbjct: 25 tgacagaagatagagagcac 44




>46917_ath-miR156h:pmrd
          Length = 106

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 tgacagaagatagagagcacaacc 33
          |||||||||| |||||||||||||
Sbjct: 12 tgacagaagaaagagagcacaacc 35




>46903_aqc-miR529:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 tgacagaagatagagagcacaacc 33
          |||||||||| |||||||||||||
Sbjct: 18 tgacagaagagagagagcacaacc 41




>46857_ahy-miR157k:pmrd
          Length = 139

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 10 tgacagaagatagagagcacaacc 33
          |||||||||| |||||||||||||
Sbjct: 22 tgacagaagagagagagcacaacc 45