miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51582_pta-miR952b:pmrd
Length = 438
Score = 866 bits (437), Expect = 0.0
Identities = 437/437 (100%)
Strand = Plus / Plus
Query: 1 gaactactcgcgcattgaactgagaatgccattggtggagtaagtacgtcaagggacgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaactactcgcgcattgaactgagaatgccattggtggagtaagtacgtcaagggacgaa 60
Query: 61 acagaattaattttgattaacattttattaaccttcaactctaccttggcttatggaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagaattaattttgattaacattttattaaccttcaactctaccttggcttatggaagt 120
Query: 121 tcgtgaaggtcacagggcaaggactagtctgctggttgctgccacagtcaattgggactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgtgaaggtcacagggcaaggactagtctgctggttgctgccacagtcaattgggactc 180
Query: 181 tcccaagttattctcagctgcagcattccgaagttattcaatgttgcagccgagaatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcccaagttattctcagctgcagcattccgaagttattcaatgttgcagccgagaatatt 240
Query: 241 atggggacagtccattggtcacaacagccagccgattacaccttgtatgagtgccccaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggggacagtccattggtcacaacagccagccgattacaccttgtatgagtgccccaac 300
Query: 301 tggtgtgagtttcatgaactgccagaagccaaaacagagttgcaacgctaataaaacatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggtgtgagtttcatgaactgccagaagccaaaacagagttgcaacgctaataaaacatt 360
Query: 361 atgcaaaattaattccattttgttggttgacatacttcatccgctaatagcacgcttagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgcaaaattaattccattttgttggttgacatacttcatccgctaatagcacgcttagt 420
Query: 421 tcaatttgctaatggtt 437
|||||||||||||||||
Sbjct: 421 tcaatttgctaatggtt 437
>51581_pta-miR952a:pmrd
Length = 450
Score = 200 bits (101), Expect = 7e-52
Identities = 358/441 (81%), Gaps = 22/441 (4%)
Strand = Plus / Plus
Query: 14 attgaactgagaatgccattggtggagtaagtacgtcaagggacgaaacagaattaattt 73
||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14 attgaacagagcatgccgttggttgagtaagtacgtcaagggacgaaacagaattaattt 73
Query: 74 tgattaacattttattaaccttcaactctaccttggcttatggaagttcgtgaaggtcac 133
| ||||||||||||||||||||||||||| ||||||| || || ||||| ||||||||||
Sbjct: 74 tcattaacattttattaaccttcaactctgccttggcctagggcagttcctgaaggtcac 133
Query: 134 a------ggg--------caaggactagtctgctggttgctgccacagtcaattgggact 179
| ||| ||| | ||||| |||||||||||| | | |||||||||
Sbjct: 134 attgactggggcgtgatacaacgcgtagtccgctggttgctgc----gaccattgggact 189
Query: 180 ctcccaagttattctcagctgcagcattccgaagttatt--caatgttgcagccgagaat 237
| |||| |||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct: 190 cccccagcctattctcagctgcaacattcgcaagttatttacagtgttgcagccgagaat 249
Query: 238 attatggggacagtccattg-gtcacaacagccagccgattacaccttgtatgagtgccc 296
| ||||| | |||| | | || ||||| |||||| ||||| | |||||| || ||||
Sbjct: 250 aaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgtatcagcgccc 309
Query: 297 caactggtgtgagtttcatgaactgccagaagccaaaacagagttgcaacgctaataaaa 356
||||||||||||| ||| ||| ||||| | ||||| |||| |||| | ||||||||||
Sbjct: 310 caactggtgtgagcttcgggaattgccatatgccaagccagatttgc-atgctaataaaa 368
Query: 357 cattatgcaaaattaattccattttgttggttgacatacttcatccgctaatagcacgct 416
|||||| | ||||||||| | ||||||||||||||| ||||| ||| | ||| ||||||
Sbjct: 369 cattattcgaaattaattgcgttttgttggttgacagacttcctccaccaatgacacgct 428
Query: 417 tagttcaatttgctaatggtt 437
||||||||||||| ||||||
Sbjct: 429 cagttcaatttgctgatggtt 449
