miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41281_ctr-MIR171:mirbase
Length = 371
Score = 323 bits (163), Expect = 2e-89
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 3 atcgacggttgaaggggagagttgtaaaatgaaatcatcaaggtattggcgcgcctcaat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcgacggttgaaggggagagttgtaaaatgaaatcatcaaggtattggcgcgcctcaat 60
Query: 63 ttaaagacgtggttaaatgggcatgattagccatgtattttcattgagccgcgtcaatat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaaagacgtggttaaatgggcatgattagccatgtattttcattgagccgcgtcaatat 120
Query: 123 ctccttaattattttgtaactctctcctctatatcctcgcctt 165
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccttaattattttgtaactctctcctctatatcctcgcctt 163
>41623_vvi-MIR171b:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 4e-14
Identities = 77/88 (87%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 43 aggtattggcgcgcctcaatttaaagacgtggttaaatg--ggcatgattagccatgtat 100
||||||||||| |||||||||||||||| |||||| ||| | || |||||||||||
Sbjct: 8 aggtattggcgtgcctcaatttaaagacatggttagatgaagagat-attagccatgtga 66
Query: 101 tttcattgagccgcgtcaatatctcctt 128
||| ||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgcgtcaatatctcctt 94
>40696_mtr-MIR171b:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 91 agccatgtattttcattgagccgcgtcaatatct 124
||||||||| ||| ||||||||||||||||||||
Sbjct: 57 agccatgtagtttgattgagccgcgtcaatatct 90
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 caaggtattggcgcgcctcaattt 64
||||||||||||||||||||||||
Sbjct: 3 caaggtattggcgcgcctcaattt 26
>42553_sbi-MIR171h:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 attgagccgcgtcaatatctc 125
|||||||||||||||||||||
Sbjct: 61 attgagccgcgtcaatatctc 81
>41989_osa-MIR171i:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 105 attgagccgcgtcaatatctc 125
|||||||||||||||||||||
Sbjct: 90 attgagccgcgtcaatatctc 110
>42773_zma-MIR171m:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 attgagccgcgtcaatatct 124
||||||||||||||||||||
Sbjct: 63 attgagccgcgtcaatatct 82
>42772_zma-MIR171l:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105 attgagccgcgtcaatatct 124
||||||||||||||||||||
Sbjct: 59 attgagccgcgtcaatatct 78
