miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgaggtcacta 39
||||||||||||||||| ||||||||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggtcacta 34
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 130 tcggaccaggcttcattccccccaat 155
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgaggtcacta 39
||||||||||||||||| ||||||||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggtcacta 34
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 96 tcggaccaggcttcattccccccaat 121
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 228 tggtgtcatcggaccaggcttcattccccccaat 261
||||||| ||||||||||||||||||||||||||
Sbjct: 123 tggtgtcgtcggaccaggcttcattccccccaat 156
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 228 tggtgtcatcggaccaggcttcattccccccaat 261
||||||| ||||||||||||||||||||||||||
Sbjct: 117 tggtgtcgtcggaccaggcttcattccccccaat 150
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgaggtcact 38
||||||||||||||||| |||||||||| ||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggacact 33
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 230 gtgtcatcggaccaggcttcattccccccaat 261
||||| ||||||||||||||||||||||||||
Sbjct: 105 gtgtcgtcggaccaggcttcattccccccaat 136
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 230 gtgtcatcggaccaggcttcattccccccaat 261
||||| ||||||||||||||||||||||||||
Sbjct: 91 gtgtcgtcggaccaggcttcattccccccaat 122
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 56.0 bits (28), Expect = 3e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 230 gtgtcatcggaccaggcttcattccccccaat 261
||||| ||||||||||||||||||||||||||
Sbjct: 102 gtgtcgtcggaccaggcttcattccccccaat 133
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 7 ttgaggggaatgttgtttggctcgaggtcac 37
|||||||||||||||| ||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggtcac 32
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 123 tcggaccaggcttcattccccccaat 148
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 121 tcggaccaggcttcattccccccaat 146
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 109 tcggaccaggcttcattccccccaat 134
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattccccccaat 125
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 82 tcggaccaggcttcattccccccaat 107
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||||||||
Sbjct: 88 tcggaccaggcttcattccccccaat 113
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgagg 33
||||||||||||||||| ||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 tgaggggaatgttgtttggctcgaggtcac 37
||||||||||||||| ||||||||||||||
Sbjct: 1 tgaggggaatgttgtctggctcgaggtcac 30
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattcccccca 259
||||||||||||||||||||||||
Sbjct: 162 tcggaccaggcttcattcccccca 185
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 gggaatgttgtttggctcgaggtca 36
|||||||||||||||||||||||||
Sbjct: 7 gggaatgttgtttggctcgaggtca 31
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 86 tcggaccaggcttcattccccccaa 110
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattccccccaa 93
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccccccaa 91
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattccccccaa 96
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattccccccaa 93
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 65 tcggaccaggcttcattccccccaa 89
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgaggt 34
||||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggt 29
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 79 tcggaccaggcttcattccccccaa 103
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 166 tcggaccaggcttcattccccccaa 190
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgaggt 34
||||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggt 29
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 135 tcggaccaggcttcattccccccaa 159
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 155 tcggaccaggcttcattccccccaa 179
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 154 tcggaccaggcttcattccccccaa 178
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaa 260
|||||||||||||||||||||||||
Sbjct: 87 tcggaccaggcttcattccccccaa 111
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 tttgaggggaatgttgtttggctcgaggt 34
||||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttgtctggctcgaggt 29
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattcccccca 259
||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcccccca 123
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ttgaggggaatgttgtttggctcgaggtca 36
||||| |||||||||| |||||||||||||
Sbjct: 2 ttgagaggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattcccccca 259
||||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccccca 85
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 ggaatgttgtttggctcgaggtca 36
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtttggctcgaggtca 31
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 ttgaggggaatgttgtttggctcgaggt 34
|||| |||||||||||||||||||||||
Sbjct: 2 ttgatgggaatgttgtttggctcgaggt 29
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattcccccca 259
||||||||||||||||||||||||
Sbjct: 79 tcggaccaggcttcattcccccca 102
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattcccccca 259
||||||||||||||||||||||||
Sbjct: 189 tcggaccaggcttcattcccccca 212
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 231 tgtcatcggaccaggcttcattccccccaat 261
|||| ||||||||||||||||||||| ||||
Sbjct: 58 tgtcctcggaccaggcttcattcccctcaat 88
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 231 tgtcatcggaccaggcttcattccccccaat 261
|||| ||||||||||||||||||||| ||||
Sbjct: 64 tgtcctcggaccaggcttcattcccctcaat 94
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 aggggaatgttgtttggctcgaggtca 36
||||||||||||| |||||||||||||
Sbjct: 5 aggggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||| ||||
Sbjct: 97 tcggaccaggcttcattcccctcaat 122
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccc 257
||||||||||||||||||||||
Sbjct: 93 tcggaccaggcttcattccccc 114
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||| ||||
Sbjct: 120 tcggaccaggcttcattcccctcaat 145
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 ttgaggggaatgttgtttggctcgaggtca 36
||||| |||||||||| |||||||||||||
Sbjct: 2 ttgagaggaatgttgtctggctcgaggtca 31
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||| ||||
Sbjct: 164 tcggaccaggcttcattcccctcaat 189
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccc 257
||||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccccc 88
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccc 257
||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcattccccc 101
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 236 tcggaccaggcttcattccccccaat 261
||||||||||||||||||||| ||||
Sbjct: 125 tcggaccaggcttcattcccctcaat 150
