miRNEST 2.0, an integrative microRNA resource :: BLAST
>41282_ctr-MIR319:mirbase
Length = 186
Score = 369 bits (186), Expect = e-103
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 14 ttaagctgggagctttcttcggtccacttatgggtggcaataggatttaattagctgctg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaagctgggagctttcttcggtccacttatgggtggcaataggatttaattagctgctg 60
Query: 74 actcattcatccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actcattcatccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatg 120
Query: 134 atgcgggagacaaattgaatcttaagcttcctgtgcttggactgaagggagctcccattg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgcgggagacaaattgaatcttaagcttcctgtgcttggactgaagggagctcccattg 180
Query: 194 ctcgct 199
||||||
Sbjct: 181 ctcgct 186
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 196 bits (99), Expect = 5e-51
Identities = 150/167 (89%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72
Query: 83 tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 142
|||||||||| ||| || || | | | ||||||||||||||||||||||||||||||
Sbjct: 73 tccaaatactgagttaaaggacaaggagattacccagtaaatgagtgaatgatgcgggag 132
Query: 143 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
|||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 133 acaaattgaatcctaagcttcctgtacttggactgaagggagctccc 179
>40465_gma-MIR319b:mirbase
Length = 208
Score = 170 bits (86), Expect = 3e-43
Identities = 151/169 (89%), Gaps = 4/169 (2%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggattt-aattagctgctgactcattc 81
||||||||||| ||||||||||||||| ||||| ||||| |||||||||| |||||||||
Sbjct: 23 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 82
Query: 82 atccaaatacttagt-aaagggtcgaaatggatacccagtaaatgagtgaatgatgcggg 140
|||||||| || ||| |||| | |||| ||||| ||| ||||||||||||||||||||
Sbjct: 83 atccaaatgctgagtgaaagcgaagaaa--gatactcagcaaatgagtgaatgatgcggg 140
Query: 141 agacaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
||||||||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct: 141 agacaaattgattcttaagtttcctgtacttggactgaagggagctccc 189
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 165 bits (83), Expect = 2e-41
Identities = 145/167 (86%), Gaps = 9/167 (5%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||||||| ||||||| |||||||||| ||||||| |||||||||| ||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
Query: 83 tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 142
|||||||||| || |||| |||||||||||||| |||||||||||||||
Sbjct: 73 tccaaatactgtgttaaggac---------tacccagtaaatgattgaatgatgcgggag 123
Query: 143 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
|||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 124 acaaattggatcttaagctccctgtgcttggactgaagggagctccc 170
>40367_rco-MIR319a:mirbase
Length = 211
Score = 145 bits (73), Expect = 2e-35
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 113 tacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 129 tacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttg 188
Query: 173 gactgaagggagctccc 189
|||||||||||||||||
Sbjct: 189 gactgaagggagctccc 205
Score = 99.6 bits (50), Expect = 8e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 7 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 66
Query: 83 tccaaatact 92
||||||||||
Sbjct: 67 tccaaatact 76
>40464_gma-MIR319a:mirbase
Length = 207
Score = 137 bits (69), Expect = 4e-33
Identities = 145/168 (86%), Gaps = 3/168 (1%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||||||| ||||||| ||||||| || || |||| |||||||||| ||||||||||
Sbjct: 23 gagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcattca 82
Query: 83 tccaaatacttagta-aagggtcgaaatggatacccagtaaatgagtgaatgatgcggga 141
||||||| | ||| ||| | |||| |||| ||| | |||||||||||||||||||
Sbjct: 83 tccaaatgttgagtgtaagcgaataaat--atactcagcagatgagtgaatgatgcggga 140
Query: 142 gacaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
|||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 141 gacaaattgaatcttaagtttcctgtacttggactgaagggagctccc 188
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 133 bits (67), Expect = 6e-32
Identities = 146/170 (85%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggattt-aattagctgctgactcattc 81
|||||||||| ||||||| ||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 6 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 65
Query: 82 atccaaatacttagtaaagggtc--gaaatggatacccagtaaatgagtgaatgatgcgg 139
|||||||| | |||||| | |||| |||| || |||||||||||||||||||
Sbjct: 66 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 125
Query: 140 gagacaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
|||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 126 gagacaaattgaatcttaagtttcctatacttggactgaagggagctccc 175
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 113 bits (57), Expect = 5e-26
Identities = 140/167 (83%), Gaps = 3/167 (1%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||| |||||||||||||| | | | |||| ||||||||||| | | ||||||||||
Sbjct: 13 gagcttttttcggtccacttatagatagtaatatgatttaattagttaccgactcattca 72
Query: 83 tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 142
|||||||||| ||| | | | | || |||||||||||||| ||| |||||||||||
Sbjct: 73 tccaaatactgagttatgagctaagat---tacccagtaaatgaatgagtgatgcgggag 129
Query: 143 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
||||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 130 acaaattaaatcttaaacttcctatcattggactgaagggagctccc 176
>41185_aqc-MIR319:mirbase
Length = 177
Score = 77.8 bits (39), Expect = 3e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 119 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttggactga 178
|||||||| |||||||| ||||||| ||||| |||||| ||||| ||| ||||||||||
Sbjct: 104 gtaaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactga 163
Query: 179 agggagctccc 189
|||||||||||
Sbjct: 164 agggagctccc 174
>41544_sly-MIR319:mirbase
Length = 168
Score = 75.8 bits (38), Expect = 1e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 124 tgagtgaatgatgcgggag-acaaattgaatcttaagcttcctgtgcttggactgaaggg 182
||||||||||| ||||||| |||| |||| |||| |||||||||| ||||||||||||||
Sbjct: 103 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 162
Query: 183 agctcc 188
||||||
Sbjct: 163 agctcc 168
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 53 ataggatttaattagctgctgactcattcatccaaat 89
||||| || |||| ||||| |||||||||||||||||
Sbjct: 30 atagggttcaatttgctgccgactcattcatccaaat 66
>40070_ath-MIR319b:mirbase
Length = 172
Score = 71.9 bits (36), Expect = 2e-13
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 119 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtgcttggactg 177
|||||||| ||||||||||| |||||||||||| |||| | |||| || |||||||||||
Sbjct: 101 gtaaatgaatgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactg 159
Query: 178 aagggagctccc 189
||||||||||||
Sbjct: 160 aagggagctccc 171
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgg 46
||||||||||||||||||| ||||
Sbjct: 4 gagctttcttcggtccactcatgg 27
>39859_aly-MIR319b:mirbase
Length = 246
Score = 71.9 bits (36), Expect = 2e-13
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 119 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtgcttggactg 177
|||||||| ||||||||||| |||||||||||| |||| | |||| || |||||||||||
Sbjct: 140 gtaaatgaatgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactg 198
Query: 178 aagggagctccc 189
||||||||||||
Sbjct: 199 aagggagctccc 210
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgg 46
||||||||||||||||||| ||||
Sbjct: 43 gagctttcttcggtccactcatgg 66
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 58.0 bits (29), Expect = 3e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 122 aatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtgcttggactgaag 180
|||| ||||||||||||||||| ||||| ||| | |||| |||||||||||||||||
Sbjct: 119 aatgtgtgaatgatgcgggagataaatttcatccttttcttctctgtgcttggactgaag 178
Query: 181 ggagctccc 189
|||||||||
Sbjct: 179 ggagctccc 187
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccc 181
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctccc 184
>40369_rco-MIR319c:mirbase
Length = 188
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 157 ctgtgcttggactgaagggagctccc 182
>41410_ptc-MIR319g:mirbase
Length = 204
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
|||||||||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctcc 194
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 50.1 bits (25), Expect = 7e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
|||||||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192
>42642_tae-MIR319:mirbase
Length = 211
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 167 tgcttggactgaagggagctccc 189
|||||||||||||||||||||||
Sbjct: 181 tgcttggactgaagggagctccc 203
>41770_bdi-MIR319:mirbase
Length = 280
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 167 tgcttggactgaagggagctccc 189
|||||||||||||||||||||||
Sbjct: 223 tgcttggactgaagggagctccc 245
>40703_mtr-MIR319:mirbase
Length = 207
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 167 tgcttggactgaagggagctccc 189
|||||||||||||||||||||||
Sbjct: 166 tgcttggactgaagggagctccc 188
>40069_ath-MIR319a:mirbase
Length = 176
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 57 gatttaattagctgctgactcattcatccaaatac 91
|||| |||||||| | |||||||||||||||||||
Sbjct: 40 gattcaattagcttccgactcattcatccaaatac 74
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 120 taaatgagtgaatgatgcgggagacaaattg 150
||||||| |||||||||||| ||||||||||
Sbjct: 104 taaatgaatgaatgatgcggtagacaaattg 134
>39858_aly-MIR319a:mirbase
Length = 221
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 120 taaatgagtgaatgatgcgggagacaaattg 150
||||||| |||||||||||| ||||||||||
Sbjct: 127 taaatgaatgaatgatgcggtagacaaattg 157
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgctgactcattcatccaaatac 91
|||||||| | |||||||||||||||||||
Sbjct: 68 aattagcttccgactcattcatccaaatac 97
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctcccat 191
|||||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcccat 176
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctccca 190
||||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctccca 168
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctccca 190
|||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccca 212
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctccc 189
|||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctccc 182
>41026_pvu-MIR319c:mirbase
Length = 734
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168 gcttggactgaagggagctcc 188
|||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctcc 428
>40466_gma-MIR319c:mirbase
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
|||||||||||||||| ||||||||
Sbjct: 177 ctgtgcttggactgaaaggagctcc 201
>40368_rco-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctccc 189
|||||||||||||||||||||
Sbjct: 153 cttggactgaagggagctccc 173
>40071_ath-MIR319c:mirbase
Length = 199
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
||||| |||||||||||||||||||
Sbjct: 164 ctgtgtttggactgaagggagctcc 188
>39861_aly-MIR319d:mirbase
Length = 267
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
||||| |||||||||||||||||||
Sbjct: 198 ctgtgtttggactgaagggagctcc 222
>39860_aly-MIR319c:mirbase
Length = 271
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
||||| |||||||||||||||||||
Sbjct: 198 ctgtgtttggactgaagggagctcc 222
>39740_smo-MIR319:mirbase
Length = 215
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctccc 189
|||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccc 205
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctccc 189
|||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctccc 165
>39481_ppt-MIR319b:mirbase
Length = 160
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctcc 188
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>39480_ppt-MIR319a:mirbase
Length = 169
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctcc 188
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
