miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 196 bits (99), Expect = 9e-50
Identities = 150/167 (89%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||||
Sbjct: 12 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 71
Query: 83 tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 142
|||||||||| ||| || || | | | ||||||||||||||||||||||||||||||
Sbjct: 72 tccaaatactgagttaaaggacaaggagattacccagtaaatgagtgaatgatgcgggag 131
Query: 143 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
|||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 132 acaaattgaatcctaagcttcctgtacttggactgaagggagctccc 178
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 151 bits (76), Expect = 5e-36
Identities = 145/168 (86%), Gaps = 10/168 (5%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactc-attc 81
||||||||||| ||||||| |||||||||| ||||||| |||||||||| ||||| ||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccattc 72
Query: 82 atccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcggga 141
||||||||||| || |||| |||||||||||||| ||||||||||||||
Sbjct: 73 atccaaatactgtgttaaggac---------tacccagtaaatgattgaatgatgcggga 123
Query: 142 gacaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 124 gacaaattggatcttaagctccctgtgcttggactgaagggagctccc 171
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 145 bits (73), Expect = 3e-34
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 113 tacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 135 tacccagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttg 194
Query: 173 gactgaagggagctccc 189
|||||||||||||||||
Sbjct: 195 gactgaagggagctccc 211
Score = 99.6 bits (50), Expect = 2e-20
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcattca 72
Query: 83 tccaaatact 92
||||||||||
Sbjct: 73 tccaaatact 82
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 133 bits (67), Expect = 1e-30
Identities = 146/170 (85%), Gaps = 3/170 (1%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggattt-aattagctgctgactcattc 81
|||||||||| ||||||| ||||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 13 gagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcattc 72
Query: 82 atccaaatacttagtaaagggtc--gaaatggatacccagtaaatgagtgaatgatgcgg 139
|||||||| | |||||| | |||| |||| || |||||||||||||||||||
Sbjct: 73 atccaaatgttgagtaaaatatatagaaacatatactcatcaaatgagtgaatgatgcgg 132
Query: 140 gagacaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
|||||||||||||||||||| ||||| | |||||||||||||||||||||
Sbjct: 133 gagacaaattgaatcttaagtttcctatacttggactgaagggagctccc 182
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 121 bits (61), Expect = 4e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 117 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttggact 176
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 94 cagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggact 153
Query: 177 gaagggagctccc 189
|||||||||||||
Sbjct: 154 gaagggagctccc 166
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 113 bits (57), Expect = 1e-24
Identities = 140/167 (83%), Gaps = 3/167 (1%)
Strand = Plus / Plus
Query: 23 gagctttcttcggtccacttatgggtggcaataggatttaattagctgctgactcattca 82
||||||| |||||||||||||| | | | |||| ||||||||||| | | ||||||||||
Sbjct: 13 gagcttttttcggtccacttatagatagtaatatgatttaattagttaccgactcattca 72
Query: 83 tccaaatacttagtaaagggtcgaaatggatacccagtaaatgagtgaatgatgcgggag 142
|||||||||| ||| | | | | || |||||||||||||| ||| |||||||||||
Sbjct: 73 tccaaatactgagttatgagctaagat---tacccagtaaatgaatgagtgatgcgggag 129
Query: 143 acaaattgaatcttaagcttcctgtgcttggactgaagggagctccc 189
||||||| |||||||| |||||| | ||||||||||||||||||||
Sbjct: 130 acaaattaaatcttaaacttcctatcattggactgaagggagctccc 176
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 75.8 bits (38), Expect = 2e-13
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 124 tgagtgaatgatgcgggag-acaaattgaatcttaagcttcctgtgcttggactgaaggg 182
||||||||||| ||||||| |||| |||| |||| |||||||||| ||||||||||||||
Sbjct: 104 tgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttggactgaaggg 163
Query: 183 agctcc 188
||||||
Sbjct: 164 agctcc 169
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 71.9 bits (36), Expect = 3e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 119 gtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttc-ctgtgcttggactg 177
|||||||| ||||||||||| |||||||||||| |||| | |||| || |||||||||||
Sbjct: 110 gtaaatgaatgaatgatgcgagagacaaattgagtcttca-cttctctatgcttggactg 168
Query: 178 aagggagctccc 189
||||||||||||
Sbjct: 169 aagggagctccc 180
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccc 186
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctccc 172
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctccc 188
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctccc 189
||||||||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccc 181
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
|||||||||||||||||||||||||
Sbjct: 155 ctgtgcttggactgaagggagctcc 179
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
|||||||||||||||||||||||||
Sbjct: 169 ctgtgcttggactgaagggagctcc 193
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 164 ctgtgcttggactgaagggagctcc 188
|||||||||||||||||||||||||
Sbjct: 167 ctgtgcttggactgaagggagctcc 191
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 120 taaatgagtgaatgatgcgggagacaaattg 150
||||||| |||||||||||| ||||||||||
Sbjct: 113 taaatgaatgaatgatgcggtagacaaattg 143
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgctgactcattcatccaaatac 91
|||||||| | |||||||||||||||||||
Sbjct: 52 aattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 120 taaatgagtgaatgatgcgggagacaaattg 150
||||||| |||||||||||| ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattg 141
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgctgactcattcatccaaatac 91
|||||||| | |||||||||||||||||||
Sbjct: 52 aattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 57 gatttaattagctgctgactcattcatccaaatac 91
|||| |||||||| | |||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaatac 81
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 120 taaatgagtgaatgatgcgggagacaaattg 150
||||||| |||||||||||| ||||||||||
Sbjct: 111 taaatgaatgaatgatgcggtagacaaattg 141
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 166 gtgcttggactgaagggagctcc 188
|||||||||||||||||||||||
Sbjct: 168 gtgcttggactgaagggagctcc 190
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 167 tgcttggactgaagggagctccc 189
|||||||||||||||||||||||
Sbjct: 157 tgcttggactgaagggagctccc 179
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 aattagctgctgactcattcatccaaa 88
|||||||||||||||||||||| ||||
Sbjct: 53 aattagctgctgactcattcattcaaa 79
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 167 tgcttggactgaagggagctccc 189
|||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctccc 186
>RF00638;MIR159;BABK01063850.1/1-151 34305:Lotus japonicus
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 aattagctgctgactcattcatccaaa 88
|||||||||||||||||||||| ||||
Sbjct: 33 aattagctgctgactcattcattcaaa 59
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctcccat 191
|||||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcccat 170
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 aattagctgctgactcattcatccaaatac 91
|||||||| | |||||||||||||||||||
Sbjct: 52 aattagcttccgactcattcatccaaatac 81
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 cttggactgaagggagctccca 190
||||||||||||||||||||||
Sbjct: 149 cttggactgaagggagctccca 170
