miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45871_miR398:micropc
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 21 gaggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgct 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgct 60
Query: 81 gcctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcacctt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcacctt 120
Query: 141 gtgttctcaggtcacccctt 160
||||||||||||||||||||
Sbjct: 121 gtgttctcaggtcacccctt 140
>46328_miR398:micropc
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 22 aggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgctg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgctg 60
Query: 82 cctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcaccttg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcaccttg 120
Query: 142 tgttctcaggtcacccct 159
||||||||||||||||||
Sbjct: 121 tgttctcaggtcacccct 138
>46761_miR398:micropc
Length = 133
Score = 174 bits (88), Expect = 1e-44
Identities = 129/140 (92%), Gaps = 7/140 (5%)
Strand = Plus / Plus
Query: 21 gaggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgct 80
||||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gaggagtgatcctgagaacagagggtggcgttggcttaaatttgattt-gcattgctgct 59
Query: 81 gcctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcacctt 140
||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct: 60 gcctgctcctgccat-----acattaaatcaaaa-agattgtatgtggccaacgcacctt 113
Query: 141 gtgttctcaggtcacccctt 160
||||||||||||||||||||
Sbjct: 114 gtgttctcaggtcacccctt 133
>46491_miR398:micropc
Length = 131
Score = 170 bits (86), Expect = 2e-43
Identities = 127/138 (92%), Gaps = 7/138 (5%)
Strand = Plus / Plus
Query: 22 aggagtgaacgtgagaacacagggtggcgttggcttaaatttgattttgcattgctgctg 81
|||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 aggagtgatcctgagaacagagggtggcgttggcttaaatttgattt-gcattgctgctg 59
Query: 82 cctgctcctgccatgccatacattaaattaaaaaagattgtatgtggccaacgcaccttg 141
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 60 cctgctcctgccat-----acattaaatcaaaa-agattgtatgtggccaacgcaccttg 113
Query: 142 tgttctcaggtcacccct 159
||||||||||||||||||
Sbjct: 114 tgttctcaggtcacccct 131
>46499_miR398:micropc
Length = 67
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 138 cttgtgttctcaggtcacccctt 160
|||||||||||||||||||||||
Sbjct: 45 cttgtgttctcaggtcacccctt 67
>46384_miR398:micropc
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 86 ttgtgttctcaggtcacccctt 107
>46310_miR398:micropc
Length = 113
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 92 ttgtgttctcaggtcacccctt 113
>46128_miR398:micropc
Length = 140
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccctt 140
>45772_miR398:micropc
Length = 92
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 71 ttgtgttctcaggtcacccctt 92
>45412_miR398:micropc
Length = 143
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 122 ttgtgttctcaggtcacccctt 143
>45288_miR398:micropc
Length = 65
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 138 cttgtgttctcaggtcacccct 159
||||||||||||||||||||||
Sbjct: 44 cttgtgttctcaggtcacccct 65
>45213_miR398:micropc
Length = 141
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 120 ttgtgttctcaggtcacccctt 141
>45083_miR398:micropc
Length = 92
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccctt 160
||||||||||||||||||||||
Sbjct: 71 ttgtgttctcaggtcacccctt 92
>46478_miR398:micropc
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 85 ttgtgttctcaggtcacccct 105
>46357_miR398:micropc
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>46301_miR398:micropc
Length = 111
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 91 ttgtgttctcaggtcacccct 111
>46028_miR398:micropc
Length = 150
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 tgtgttctcaggtcacccctt 160
|||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccctt 150
>45917_miR398:micropc
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 120 ttgtgttctcaggtcacccct 140
>45602_miR398:micropc
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 122 ttgtgttctcaggtcacccct 142
>45427_miR398:micropc
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccct 94
>45118_miR398:micropc
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>44964_miR398:micropc
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 ttgtgttctcaggtcacccct 159
|||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccct 94
>46703_miR398:micropc
Length = 149
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 tgtgttctcaggtcacccct 159
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>46124_miR398:micropc
Length = 97
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 tgtgttctcaggtcacccct 159
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>45706_miR398:micropc
Length = 106
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 tgtgttctcaggtcacccct 159
||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccct 106
>45380_miR398:micropc
Length = 108
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 tgtgttctcaggtcacccct 159
||||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcacccct 107
>45370_miR398:micropc
Length = 95
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 tgtgttctcaggtcacccct 159
||||||||||||||||||||
Sbjct: 76 tgtgttctcaggtcacccct 95
