miRNEST 2.0, an integrative microRNA resource :: BLAST
>48428_cpt-miR408:pmrd
Length = 100
Score = 178 bits (90), Expect = 5e-46
Identities = 96/98 (97%)
Strand = Plus / Plus
Query: 2 agacaaaagacggggaacaggcagagcatggatggaactattaacaggttccctgttttg 61
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 1 agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 60
Query: 62 gctcctcccatgcactgcctcttccctggctctctgcc 99
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcctcccatgcactgcctcttccctggctctctgcc 98
>51762_ptc-miR408:pmrd
Length = 105
Score = 91.7 bits (46), Expect = 9e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggaactattaacag-gttccctgttttggctcc 66
|||||||||||||||||||||||||||||| ||| |||||| | | |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 71
Query: 67 tcccatgcactgcctcttccctggct 92
|||||||||||||||||||||||||
Sbjct: 72 acccatgcactgcctcttccctggct 97
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 77.8 bits (39), Expect = 1e-15
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 12 cggggaacaggcagagcatggatggaactattaacag-gttccctgttttggctcctccc 70
|||||||||||||||||||||||||| ||| |||||| | | ||||||||||| |||
Sbjct: 1 cggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctaccc 60
Query: 71 atgcactgcctcttccctg 89
|||||||||||||||||||
Sbjct: 61 atgcactgcctcttccctg 79
>54892_vvi-miR408:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcactgcctcttccctggctct 94
||||||| |||| |||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
>54389_rco-miR408:pmrd
Length = 129
Score = 58.0 bits (29), Expect = 1e-09
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 7 aaagacggggaacaggcagagcatggatggaactattaacaggttcc--ctgttttggct 64
|||||| |||||||||||| |||||||||| ||| |||||| | |||||||||||
Sbjct: 24 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 83
Query: 65 cctcccatgcactgcctcttccctggct 92
| ||| |||||||||||||||||||||
Sbjct: 84 ctacccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 54 ctgttttggctcctcccatgcactgcctcttccctggctc 93
|||||||| ||| ||||||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcactgcctcttccctggctc 93
|||||||| ||| ||||||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggctc 142
>54648_sof-miR408c:pmrd
Length = 286
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 tcctcccatgcactgcctcttccctggctc 93
||||||| ||||||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 tcctcccatgcactgcctcttccctggctc 93
||||||| ||||||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 64 tcctcccatgcactgcctcttccctggctc 93
||||||| ||||||||||||||||||||||
Sbjct: 237 tcctcccctgcactgcctcttccctggctc 266
>55104_zma-miR408:pmrd
Length = 191
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 cctcccatgcactgcctcttccctggctc 93
|||||| ||||||||||||||||||||||
Sbjct: 146 cctcccctgcactgcctcttccctggctc 174
>54499_sbi-miR408:pmrd
Length = 205
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 64 tcctcccatgcactgcctcttccctggct 92
||||||| |||||||||||||||||||||
Sbjct: 177 tcctcccctgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 cctcccatgcactgcctcttccctggctc 93
|||||| ||||||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 69 ccatgcactgcctcttccctggct 92
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 atgcactgcctcttccctggctc 93
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 catgcactgcctcttccctggct 92
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 catgcactgcctcttccctggct 92
|||||||||||||||||||||||
Sbjct: 74 catgcactgcctcttccctggct 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatgga 37
||||| ||||||||| ||||||||||||||
Sbjct: 7 aagacagggaacaggtagagcatggatgga 36
>54690_tae-miR408:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgcactgcctcttccctggctc 93
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>54649_sof-miR408d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 tgcactgcctcttccctggctc 93
||||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggctc 198
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 atgcactgcctcttccctggct 92
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 ccatgcactgcctcttccctgg 90
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
