miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 91.7 bits (46), Expect = 2e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 8 aagacggggaacaggcagagcatggatggaactattaacag-gttccctgttttggctcc 66
|||||||||||||||||||||||||||||| ||| |||||| | | |||||||||||
Sbjct: 16 aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 75
Query: 67 tcccatgcactgcctcttccctggct 92
|||||||||||||||||||||||||
Sbjct: 76 acccatgcactgcctcttccctggct 101
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 58.0 bits (29), Expect = 2e-08
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 7 aaagacggggaacaggcagagcatggatggaactattaacaggttcc--ctgttttggct 64
|||||| |||||||||||| |||||||||| ||| |||||| | |||||||||||
Sbjct: 15 aaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttggct 74
Query: 65 cctcccatgcactgcctcttccctggct 92
| ||| |||||||||||||||||||||
Sbjct: 75 ctacccctgcactgcctcttccctggct 102
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcactgcctcttccctggctct 94
||||||| |||| |||||||||||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggctct 110
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 54 ctgttttggctcctcccatgcactgcctcttccctggct 92
||||| ||||||| | |||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 68 cccatgcactgcctcttccctggctc 93
||||||||||||||||||||||||||
Sbjct: 84 cccatgcactgcctcttccctggctc 109
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 72 tgcactgcctcttccctggctctct 96
|||||||||||||||||||||||||
Sbjct: 86 tgcactgcctcttccctggctctct 110
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 catgcactgcctcttccctggctct 94
|||||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggctct 141
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 cctcccatgcactgcctcttccctggctc 93
|||||| ||||||||||||||||||||||
Sbjct: 136 cctcccctgcactgcctcttccctggctc 164
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 cctcccatgcactgcctcttccctggctc 93
|||||| ||||||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 cctcccatgcactgcctcttccctggctc 93
|||||| ||||||||||||||||||||||
Sbjct: 138 cctcccctgcactgcctcttccctggctc 166
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 cctcccatgcactgcctcttccctggctc 93
|||||| ||||||||||||||||||||||
Sbjct: 136 cctcccctgcactgcctcttccctggctc 164
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 14 gggaacaggcagagcatggatggaactattaaca 47
||||| |||||||||||||||||| |||| ||||
Sbjct: 23 gggaagaggcagagcatggatggagctatcaaca 56
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 70 catgcactgcctcttccctggc 91
||||||||||||||||||||||
Sbjct: 97 catgcactgcctcttccctggc 118
