miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 69.9 bits (35), Expect = 7e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 70 ggcaacatgtgttctcaggtcgcccctgccgggct 104
|||||||||||||||||||||||||||||||||||
Sbjct: 44 ggcaacatgtgttctcaggtcgcccctgccgggct 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 11 aggattcctacaggagcgacctggaat-acatgtgggct 48
||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 aggattcctacaggagcgacctgaaatcacatgtgggct 39
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgccgggctttc 107
|||||||||||||||||||||||||||||||||
Sbjct: 106 catgtgttctcaggtcgcccctgccgggctttc 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aggattcctacaggagcgacctg 33
|||||||||||||||||||||||
Sbjct: 1 aggattcctacaggagcgacctg 23
>RF00695;MIR398;CU225561.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 70 ggcaacatgtgttctcaggtcgcccctgccgggct 104
|||||||| ||||||||||||||||||||||||||
Sbjct: 44 ggcaacatttgttctcaggtcgcccctgccgggct 78
Score = 54.0 bits (27), Expect = 4e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 11 aggattcctacaggagcgacctggaat-acatgtgggct 48
||||||||||||||||||||||| ||| |||||||||||
Sbjct: 1 aggattcctacaggagcgacctgaaatcacatgtgggct 39
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgccgggctt 105
|||||||||||||||||||||||||||||||
Sbjct: 54 catgtgttctcaggtcgcccctgccgggctt 84
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcgcccctgccggg 102
||||||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgccggg 83
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||||
Sbjct: 65 catgtgttctcaggtcgcccctgc 88
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||||
Sbjct: 58 catgtgttctcaggtcgcccctgc 81
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||
Sbjct: 98 tgtgttctcaggtcgcccctgc 119
