miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1
OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2
Length = 98
Score = 62.8 bits (151), Expect = 7e-10
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = -1
Query: 95 VCHRACKTCCNRCRCVPPGTYGNKSACPCYA 3
+CHRAC TCC RC CVPPGTYGN C CYA
Sbjct: 56 LCHRACGTCCYRCNCVPPGTYGNYDKCQCYA 86
>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1
SV=1
Length = 104
Score = 60.5 bits (145), Expect = 3e-09
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = -1
Query: 95 VCHRACKTCCNRCRCVPPGTYGNKSACPCYA 3
+C+RAC TCC RC CVPPGT GN CPCYA
Sbjct: 62 LCNRACGTCCARCNCVPPGTSGNTETCPCYA 92
>sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2
OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1
Length = 99
Score = 58.5 bits (140), Expect = 1e-08
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = -1
Query: 95 VCHRACKTCCNRCRCVPPGTYGNKSACPCYA 3
+C RAC +CC+RC CVPPGT GN CPCYA
Sbjct: 57 LCLRACNSCCSRCNCVPPGTSGNTHLCPCYA 87
>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3
OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1
Length = 99
Score = 57.4 bits (137), Expect = 3e-08
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1
Query: 95 VCHRACKTCCNRCRCVPPGTYGNKSACPCYA 3
+C RAC +CC RC CVPPGT GN CPCYA
Sbjct: 57 LCLRACNSCCYRCNCVPPGTAGNHHLCPCYA 87
>sp|Q948Z4|SNAK1_SOLTU Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1
SV=1
Length = 88
Score = 52.8 bits (125), Expect = 7e-07
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -1
Query: 92 CHRACKTCCNRCRCVPPGTYGNKSACPCY 6
C + C CC C+CVP GTYGNK CPCY
Sbjct: 47 CLKYCGICCEECKCVPSGTYGNKHECPCY 75
>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum
GN=GAST1 PE=2 SV=1
Length = 112
Score = 52.0 bits (123), Expect = 1e-06
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = -1
Query: 92 CHRACKTCCNRCRCVPPGTYGNKSACPCY 6
C C+ CC +C CVP GTYGNK +CPCY
Sbjct: 71 CMFFCQKCCAKCLCVPAGTYGNKQSCPCY 99
>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4
OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2
Length = 106
Score = 49.7 bits (117), Expect = 6e-06
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -1
Query: 92 CHRACKTCCNRCRCVPPGTYGNKSACPCY 6
C C CC +C CVPPG YGNK C CY
Sbjct: 65 CITFCNKCCRKCLCVPPGYYGNKQVCSCY 93
>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1
PE=2 SV=1
Length = 96
Score = 48.9 bits (115), Expect = 1e-05
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = -1
Query: 92 CHRACKTCCNRCRCVPPGTYGNKSACPCY 6
C C+ CC C CVP G YGNK +CPCY
Sbjct: 55 CMFFCQKCCATCLCVPKGVYGNKQSCPCY 83
