miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 285 bits (144), Expect = 1e-76
Identities = 158/165 (95%)
Strand = Plus / Plus
Query: 24 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 84 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcaggagc 120
Query: 144 tttattacctaatgttagatcnnnnnnnggattgaagggagctct 188
||||||||||||||||||||| |||||||||||||||||
Sbjct: 121 tttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 109 bits (55), Expect = 2e-23
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 18 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 77
|||||||||||||||||||||||||||| | || || ||||||||| |||||||||||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66
Query: 78 atgaatcccacagccctat 96
||| |||||||||||||||
Sbjct: 67 atggatcccacagccctat 85
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 103 bits (52), Expect = 1e-21
Identities = 146/176 (82%), Gaps = 4/176 (2%)
Strand = Plus / Plus
Query: 18 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 77
|||||||||||||||||||||||||||| | || |||||||||||| ||||||| ||||
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 78 atgaatcccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctc 137
||| |||| |||| |||||| |||| | ||| || |||||||||||||||||
Sbjct: 67 atggatcc-acagtcctatct--atcaaccgaag-gataggtttgcggcttgcatatctc 122
Query: 138 aggagctttattacctaatgttagatcnnnnnnnggattgaagggagctctaaacc 193
|||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 123 aggagctttattgcctaatgttagatccctttttggattgaagggagctctaaacc 178
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 97.6 bits (49), Expect = 6e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 17 tggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagc 76
||||||||||||||||||||||||||||| | || | |||||||||| ||||||||||
Sbjct: 6 tggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgact 65
Query: 77 tatgaatcccacagccctatc 97
|||| ||||||||||||||||
Sbjct: 66 tatggatcccacagccctatc 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 63.9 bits (32), Expect = 8e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 24 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 83
|||||||||||||||||||||| | | ||| |||| ||| ||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 84 cccacagcccta 95
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 63.9 bits (32), Expect = 8e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 18 ggagtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagct 77
|||||||||||||||||||||||| ||||| || | || ||||| |||||||||| ||
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacct 66
Query: 78 atgaatcccacagccctatc 97
||| || || ||||||||||
Sbjct: 67 atggattcctcagccctatc 86
