miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 172 bits (87), Expect = 7e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 23 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 64
Query: 83 accgatcgataaacctctgcatccagc 109
|||||||||||||||||||||||||||
Sbjct: 65 accgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 99.6 bits (50), Expect = 9e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 23 ggaggcagcggttcatcgatctcttcctggccaattttttgtttagcacgaaaaacatga 82
|||||||||||||||||||||| |||||| | |||||||||| |||||| |||| ||
Sbjct: 5 ggaggcagcggttcatcgatcttttcctgaagatttttttgttttacacgaacaacacga 64
Query: 83 accgatcgataaacctctgcatccag 108
||||||||||||||||||||||||||
Sbjct: 65 accgatcgataaacctctgcatccag 90
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 ggaggcagcggttcatcgatctcttcctgg 52
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 76 aacatgaaccgatcgataaacctctgcatccagc 109
|||||||| |||||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 60.0 bits (30), Expect = 7e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 ggaggcagcggttcatcgatctcttcctgg 52
||||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctgg 34
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 78 catgaaccgatcgataaacctctgcatccagc 109
|||||| |||||||||||||||||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 23 ggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||
Sbjct: 5 ggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 73 aaaaacatgaaccgatcgataaacctctgcatccagc 109
|||| |||||| ||||||||||||||||||||||||
Sbjct: 52 aaaagcatgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 75 aaacatgaaccgatcgataaacctctgcatccagc 109
||||||||| || ||||||||||||||||||||||
Sbjct: 56 aaacatgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
pekinensis
Length = 92
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 73 aaaaacatgaaccgatcgataaacctctgcatccagc 109
|||| ||||||| ||||||||||||| ||||||||||
Sbjct: 56 aaaagcatgaacagatcgataaacctgtgcatccagc 92
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 cgatcgataaacctctgcatccagc 109
|||||||||||||||||||||||||
Sbjct: 67 cgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 gcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||
Sbjct: 9 gcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 tcgataaacctctgcatccagc 109
||||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccagc 88
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 85 cgatcgataaacctctgcatccagc 109
|||||||||||||||||||||||||
Sbjct: 108 cgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 cgatcgataaacctctgcatccag 108
||||||||||||||||||||||||
Sbjct: 134 cgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 cgatcgataaacctctgcatccag 108
||||||||||||||||||||||||
Sbjct: 135 cgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 tcgataaacctctgcatccagc 109
||||||||||||||||||||||
Sbjct: 112 tcgataaacctctgcatccagc 133
