miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 194 bits (98), Expect = 2e-49
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 15 aatcgaatggcagggcaattctcccttggcaaaacagaaatatgcaggcatttatttcca 74
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 102 aatcgaatggcagggcaattctcctttggcaaaacagaaatatgcaggcatttatttcca 43
Query: 75 tgttctgtttgccaaaggaggataaagccctgttattcttta 116
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tgttctgtttgccaaaggaggataaagccctgttattcttta 1
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 18 cgaatggcagggcaattctcccttggcaaaacagaaatatgca 60
||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 89 cgaatggcagggcaattctcctttggcaaaacagaagtatgca 47
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 19 gaatggcagggcaattctcccttggcaaa 47
|||||||||||||||||||| ||||||||
Sbjct: 123 gaatggcagggcaattctcctttggcaaa 95
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 18 cgaatggcagggcaattctcccttggcaa 46
||||||||||||||||||||| |||||||
Sbjct: 109 cgaatggcagggcaattctcctttggcaa 81
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 18 cgaatggcagggcaattctcccttggca 45
||||||||||||||||||||| ||||||
Sbjct: 110 cgaatggcagggcaattctcctttggca 83
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus
trichocarpa
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 19 gaatggcagggcaattctcccttggca 45
|||||||||||||||||||| ||||||
Sbjct: 91 gaatggcagggcaattctcctttggca 65
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago
truncatula (barrel medic)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 20 aatggcagggcaattctcccttggcaaaacagaaa 54
||||||||||||| ||||| |||||||| ||||||
Sbjct: 95 aatggcagggcaaatctcctttggcaaaccagaaa 61
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 19 gaatggcagggcaattctcccttggca 45
|||||||||||||||||||| ||||||
Sbjct: 109 gaatggcagggcaattctcctttggca 83
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 19 gaatggcagggcaattctcccttggca 45
|||||||||||||||||||| ||||||
Sbjct: 93 gaatggcagggcaattctcctttggca 67
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 19 gaatggcagggcaattctcccttggcaaaa 48
|||||||||||||| ||||| |||||||||
Sbjct: 92 gaatggcagggcaaatctcctttggcaaaa 63
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 20 aatggcagggcaattctcccttggcaaaacagaa 53
||||||||||||| ||||| |||||||| |||||
Sbjct: 95 aatggcagggcaaatctcctttggcaaaccagaa 62
