miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00721;MIR475;AY728406.1/1-120 3694:Populus trichocarpa
Length = 120
Score = 157 bits (79), Expect = 5e-38
Identities = 112/122 (91%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 11 atcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgct 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgct 60
Query: 71 aaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaag 130
||||||| || || || ||||| || ||||||| |||||||||||||||||||||||
Sbjct: 61 gaaatgtgcgaccaa--atagactcttgatatttcattcttacagtgcccattgattaag 118
Query: 131 at 132
||
Sbjct: 119 at 120
>RF00721;MIR475;AARH01003574.1/486567-486472 3694:Populus
trichocarpa
Length = 96
Score = 85.7 bits (43), Expect = 1e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 10 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaa 56
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catcctgatcaatggccattgtaagagtagaaggatccatgaagcaa 47
Score = 69.9 bits (35), Expect = 9e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 83 aaaacattgactcctggtatttcactcttacagtgcccattgattaagatg 133
|||||||||||||||| |||| ||||||||||| | |||||||||||||||
Sbjct: 46 aaaacattgactcctgatattccactcttacagagtccattgattaagatg 96
>RF00721;MIR475;AY728407.1/4-123 3694:Populus trichocarpa
Length = 120
Score = 79.8 bits (40), Expect = 9e-15
Identities = 103/122 (84%), Gaps = 4/122 (3%)
Strand = Plus / Plus
Query: 10 catcttgatcaatggccattgtaagagtagaaggatccatgaagcaataactctctttgc 69
|||||||| |||||||||||||||||||| | | ||||||| ||||||||||||||||
Sbjct: 1 catcttgaacaatggccattgtaagagta-agtggtccatgagtcaataactctctttgc 59
Query: 70 taaaatgtgtgataaaacattgactcctggtatttcactcttacagtgcccattgattaa 129
||||| ||| ||| |||||||||| |||||||| |||||| || |||||||||||
Sbjct: 60 agaaatgcatgacaaagcattgactcc---tatttcacccttacaatgtccattgattaa 116
Query: 130 ga 131
||
Sbjct: 117 ga 118
>RF00721;MIR475;AARH01003768.1/271930-272004 3694:Populus
trichocarpa
Length = 75
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 86 acattgactcctggtatttcactcttacagtgcccattgattaagatg 133
||||||||||||| ||||||||||||||| || ||| |||| ||||||
Sbjct: 28 acattgactcctgatatttcactcttacaatgtccactgatcaagatg 75
>RF00721;MIR475;AARH01008938.1/4078-4201 3694:Populus trichocarpa
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 catcttgatcaatggccattgtaagagtagaaggat 45
||||||||||||||| |||| ||||||||||||||
Sbjct: 1 catcttgatcaatggatattgcaagagtagaaggat 36
>RF00721;MIR475;AARH01005578.1/44382-44496 3694:Populus trichocarpa
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 106 actcttacagtgcccattgatta 128
|||||||||||||||||||||||
Sbjct: 28 actcttacagtgcccattgatta 6
>RF00721;MIR475;AC215648.1/32374-32257 3694:Populus trichocarpa
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 tcttgatcaatggccattgtaagagtagaaggat 45
||||||||||||| |||| ||||||||||||||
Sbjct: 3 tcttgatcaatggatattgcaagagtagaaggat 36
