miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 188 bits (95), Expect = 9e-48
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1 aaagaataacagggctttatcctcctttggcaaacagaacatggaaataaatgcctgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaagaataacagggctttatcctcctttggcaaacagaacatggaaataaatgcctgcat 61
Query: 61 atttctgttttgccaagggagaattgccctgccattcga 99
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 62 atttctgttttgccaaaggagaattgccctgccattcga 100
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 69.9 bits (35), Expect = 6e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 56 tgcatatttctgttttgccaagggagaattgccctgccattcg 98
|||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 47 tgcatacttctgttttgccaaaggagaattgccctgccattcg 89
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 69 tttgccaagggagaattgccctgccattc 97
|||||||| ||||||||||||||||||||
Sbjct: 95 tttgccaaaggagaattgccctgccattc 123
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 70 ttgccaagggagaattgccctgccattcg 98
||||||| |||||||||||||||||||||
Sbjct: 81 ttgccaaaggagaattgccctgccattcg 109
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 71 tgccaagggagaattgccctgccattcg 98
|||||| |||||||||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccattcg 110
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus
trichocarpa
Length = 95
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tgccaagggagaattgccctgccattc 97
|||||| ||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattc 91
>RF00445;mir-399;AC160628.37/109895-109796 3880:Medicago
truncatula (barrel medic)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 62 tttctgttttgccaagggagaattgccctgccatt 96
|||||| |||||||| ||||| |||||||||||||
Sbjct: 61 tttctggtttgccaaaggagatttgccctgccatt 95
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tgccaagggagaattgccctgccattc 97
|||||| ||||||||||||||||||||
Sbjct: 83 tgccaaaggagaattgccctgccattc 109
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 tgccaagggagaattgccctgccattc 97
|||||| ||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattc 93
>RF00445;mir-399;EU626443.1/55199-55104 47615:Gossypioides kirkii
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 68 ttttgccaagggagaattgccctgccattc 97
||||||||| ||||| ||||||||||||||
Sbjct: 63 ttttgccaaaggagatttgccctgccattc 92
>RF00445;mir-399;AC160628.37/99250-99151 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 63 ttctgttttgccaagggagaattgccctgccatt 96
||||| |||||||| ||||| |||||||||||||
Sbjct: 62 ttctggtttgccaaaggagatttgccctgccatt 95
