miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01005;MIR530;AC182714.2/17566-17395 3694:Populus trichocarpa
Length = 172
Score = 276 bits (139), Expect = 1e-73
Identities = 172/186 (92%), Gaps = 14/186 (7%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgcatcttttgcgtttgttttgtttttg 60
Query: 69 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaattagatatagagtg 128
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actccacaaacaaaatcaagttctgtcgatacagtatgtgggacaa-------------- 106
Query: 129 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ttagatatggaaactaataagcttagttgaggtgcaggtgcaagtgcaggtgaatgccat 166
Query: 189 tttggt 194
||||||
Sbjct: 167 tttggt 172
>RF01005;MIR530;AASG02002502.1/29848-29672 3988:Ricinus communis
(castor bean)
Length = 177
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgca 44
||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaatatgttgcctttatctgcatttgcacctgca 36
Score = 58.0 bits (29), Expect = 5e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 158 aggtgcaggtgcaagtgcaggtgaatgccattttggt 194
||||||||||| ||||||||||||||||||||||||
Sbjct: 141 aggtgcaggtgtgagtgcaggtgaatgccattttggt 177
>RF01005;MIR530;AARH01003925.1/6653-6796 3694:Populus trichocarpa
Length = 144
Score = 63.9 bits (32), Expect = 8e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgca 44
||||| ||||||||||||||||||||||||||||||
Sbjct: 1 gccaacatgttgcctttatctgcatttgcacctgca 36
Score = 63.9 bits (32), Expect = 8e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 155 ttgaggtgcaggtgcaagtgcaggtgaatgccattttggt 194
|||||||||||||||| ||||||||||||||||| |||||
Sbjct: 105 ttgaggtgcaggtgcaggtgcaggtgaatgccatgttggt 144
>RF01005;MIR530;BABK01011395.1/470-304 34305:Lotus japonicus
Length = 167
Score = 56.0 bits (28), Expect = 2e-07
Identities = 35/36 (97%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 9 gccaatatgttgcctttatctgcatttgcacctgca 44
||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gccaatatgtt-cctttatctgcatttgcacctgca 35
>RF01005;MIR530;ABIM01000670.1/18536-18381 3649:Carica papaya
(papaya)
Length = 156
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 atgttgcctttatctgcatttgcacctgca 44
||||| ||||||||||||||||||||||||
Sbjct: 7 atgtttcctttatctgcatttgcacctgca 36
>RF01005;MIR530;BABK01011395.1/314-467 34305:Lotus japonicus
Length = 154
Score = 50.1 bits (25), Expect = 1e-05
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 12 aatatgttgcctttatctgcatttgcacctgca 44
|||||||| ||||||||||||||||||||||||
Sbjct: 154 aatatgtt-cctttatctgcatttgcacctgca 123
>RF01005;MIR530;CAAP02000356.1/124211-124051 29760:Vitis vinifera
Length = 161
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcctttatctgcatttgcacctgca 44
|||||||||||||||||||||||||
Sbjct: 12 gcctttatctgcatttgcacctgca 36
>RF01005;MIR530;CAAP02000018.1/279657-279483 29760:Vitis vinifera
Length = 175
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 tttatctgcatttgcacctgcatctttt 50
|||||||||||||||||||||| |||||
Sbjct: 11 tttatctgcatttgcacctgcacctttt 38
>RF01005;MIR530;AASG02012391.1/1028-920 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 tttatctgcatttgcacctgca 44
||||||||||||||||||||||
Sbjct: 16 tttatctgcatttgcacctgca 37
