miRNEST 2.0, an integrative microRNA resource :: BLAST
>41242_csi-MIR396b:mirbase
Length = 134
Score = 77.8 bits (39), Expect = 2e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 12 atgatcctctttgtattcttccacagctttcttgaactgcatc 54
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2 atgatcctctttgtatttttccacagctttcttgaactgcatc 44
Score = 61.9 bits (31), Expect = 1e-10
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacagataggctcaataaaa 165
|||||| |||||||||||||||||||||||| | ||| |||||||||
Sbjct: 82 ttgcggttcaataaagctgtgggaagatacaaacaggttcaataaaa 128
>40473_gma-MIR396a:mirbase
Length = 140
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 18 ctctttgtattcttccacagctttcttgaactgcatcca 56
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcatcca 47
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacagataggctcaa 160
|||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagatacagatagggtcaa 139
>40646_lja-MIR396:mirbase
Length = 108
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 16 tcctctttgtattcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tcctctttgtattcttccacagctttcttgaactgcat 39
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacagatagg 155
|||||| |||||||||||||||||||||| |||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagatatagatagg 107
>41139_tcc-MIR396b:mirbase
Length = 151
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 17 cctctttgtattcttccacagctttcttgaactgc 51
|||||||||||||||||||||||||||||||||||
Sbjct: 8 cctctttgtattcttccacagctttcttgaactgc 42
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 126 tcaataaagctgtgggaagatac 148
|||||||||||||||||||||||
Sbjct: 115 tcaataaagctgtgggaagatac 137
>41663_vvi-MIR396d:mirbase
Length = 120
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatac 148
|||||| |||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagatac 114
>41436_ptc-MIR396b:mirbase
Length = 132
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 120 tgcgggtcaataaagctgtgggaagataca 149
||||| ||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131
>40727_mtr-MIR396b:mirbase
Length = 95
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 25 tattcttccacagctttcttgaactgcatcca 56
||||||||||||||||||||||||||||||||
Sbjct: 1 tattcttccacagctttcttgaactgcatcca 32
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagata 147
|||||| ||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagata 95
>39877_aly-MIR396a:mirbase
Length = 172
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 17 cctctttgtattcttccacagctttcttgaactgca 52
||||| ||||||||||||||||||||||||||||||
Sbjct: 11 cctctctgtattcttccacagctttcttgaactgca 46
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatac 148
|||||| |||||||||||||||||||||||
Sbjct: 128 ttgcggttcaataaagctgtgggaagatac 157
>40085_ath-MIR396a:mirbase
Length = 151
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 tgtattcttccacagctttcttgaactgca 52
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacaga 151
|||||| ||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatacaga 150
>41435_ptc-MIR396a:mirbase
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 gtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
|||||| ||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagataca 122
>41058_ghr-MIR396b:mirbase
Length = 135
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 gtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
|||||| ||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132
>41057_ghr-MIR396a:mirbase
Length = 136
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 gtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
|||||| ||||||||||||||||||||||||
Sbjct: 102 ttgcggttcaataaagctgtgggaagataca 132
>42814_zma-MIR396h:mirbase
Length = 124
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 109 tctttgtgatcttccacagctttcttgaactgcatc 74
>42808_zma-MIR396b:mirbase
Length = 136
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
>42583_sbi-MIR396b:mirbase
Length = 128
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
>42461_sof-MIR396:mirbase
Length = 134
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
>42813_zma-MIR396g:mirbase
Length = 114
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 113 tcttccacagctttcttgaactgcatc 87
>42027_osa-MIR396b:mirbase
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatc 35
>41794_bdi-MIR396d:mirbase
Length = 152
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgcatc 57
>41241_csi-MIR396a:mirbase
Length = 153
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 16 tcctctttgtattcttccacagctttcttgaactg 50
|||||||||| |||||||||||||||||||||||
Sbjct: 7 tcctctttgtgatcttccacagctttcttgaactg 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 15 atcctctttgtattcttccacagctttcttgaa 47
|||||||| ||| | ||||||||||||||||||
Sbjct: 122 atcctcttagtagttttccacagctttcttgaa 90
>42807_zma-MIR396a:mirbase
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
>42582_sbi-MIR396a:mirbase
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
>42472_ssp-MIR396:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatc 25
>42026_osa-MIR396a:mirbase
Length = 154
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>41793_bdi-MIR396c:mirbase
Length = 153
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgc 51
||||||||||||||||||||||||
Sbjct: 31 tcttccacagctttcttgaactgc 54
>41188_aqc-MIR396a:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaa 143
|||||| ||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
>41662_vvi-MIR396c:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>40477_gma-MIR396e:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 5 tcttccacagctttcttgaactg 27
>39379_pab-MIR396a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaact 49
||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaact 35
>41138_tcc-MIR396a:mirbase
Length = 146
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactg 50
|||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaactg 41
>39878_aly-MIR396b:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 25 tattcttccacagctttcttgaact 49
|||| ||||||||||||||||||||
Sbjct: 27 tatttttccacagctttcttgaact 51
>42812_zma-MIR396f:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 2 ttccacagctttcttgaact 21
>42811_zma-MIR396e:mirbase
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 2 ttccacagctttcttgaact 21
>42584_sbi-MIR396c:mirbase
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>42028_osa-MIR396c:mirbase
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 32 ttccacagctttcttgaact 51
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>41660_vvi-MIR396a:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>41243_csi-MIR396c:mirbase
Length = 178
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 13 ttccacagctttcttgaact 32
>41212_ccl-MIR396:mirbase
Length = 277
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 143 ttccacagctttcttgaact 162
>41189_aqc-MIR396b:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40476_gma-MIR396d:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>40475_gma-MIR396c:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40474_gma-MIR396b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>40379_rco-MIR396:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>40296_bna-MIR396a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>40086_ath-MIR396b:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>39426_pta-MIR396:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
