miRNEST 2.0, an integrative microRNA resource :: BLAST
>48578_gma-miR396a:pmrd
Length = 140
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 18 ctctttgtattcttccacagctttcttgaactgcatcca 56
|||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcatcca 47
Score = 67.9 bits (34), Expect = 2e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacagataggctcaa 160
|||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagatacagatagggtcaa 139
>48680_lja-miR396:pmrd
Length = 108
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 16 tcctctttgtattcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tcctctttgtattcttccacagctttcttgaactgcat 39
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacagatagg 155
|||||| |||||||||||||||||||||| |||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagatatagatagg 107
>54871_vvi-miR396d:pmrd
Length = 120
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatac 148
|||||| |||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagatac 114
>51735_ptc-miR396b:pmrd
Length = 132
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ctttgtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 120 tgcgggtcaataaagctgtgggaagataca 149
||||| ||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagataca 131
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 17 cctctttgtattcttccacagctttcttgaactgca 52
||||| ||||||||||||||||||||||||||||||
Sbjct: 5 cctctctgtattcttccacagctttcttgaactgca 40
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacaga 151
|||||| ||||||||||||||||||||||||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagatacaga 157
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 22 ttgtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgca 31
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 120 tgcgggtcaataaagctgtgggaagataca 149
||||| ||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagataca 129
>47008_ath-miR396a:pmrd
Length = 151
Score = 60.0 bits (30), Expect = 6e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 23 tgtattcttccacagctttcttgaactgca 52
||||||||||||||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagatacaga 151
|||||| ||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagatacaga 150
>51734_ptc-miR396a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 gtattcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaagataca 149
|||||| ||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagataca 122
>55073_zma-miR396b:pmrd
Length = 136
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
>54645_sof-miR396:pmrd
Length = 134
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
>54486_sbi-miR396b:pmrd
Length = 128
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tctttgtattcttccacagctttcttgaactgcatc 54
||||||| |||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatc 45
>48485_gcl-miR396a:pmrd
Length = 101
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaactgcatccat 57
||||||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatccat 74
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 119 ttgcgggtcaataaagctgtggga 142
|||||| |||||||||||||||||
Sbjct: 24 ttgcggttcaataaagctgtggga 1
>55079_zma-miR396h:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatc 28
>48946_osa-miR396b:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatc 35
>55074_zma-miR396c:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
>55072_zma-miR396a:pmrd
Length = 137
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
>54485_sbi-miR396a:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgcat 53
||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
>55083_zma-miR396l:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcatc 54
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatc 25
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactgca 52
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
>55081_zma-miR396j:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48486_gcl-miR396b:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcatccat 57
||||| ||||||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcatccat 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtggga 142
|||||| |||||||||||||||||
Sbjct: 78 ttgcggttcaataaagctgtggga 101
>46887_aqc-miR396a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgcat 53
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtgggaa 143
|||||| ||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 tcttccacagctttcttgaactg 50
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgca 52
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtggga 142
|||||| |||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgca 52
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 119 ttgcgggtcaataaagctgtggga 142
|||||| |||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaactgc 51
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaact 74
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51736_ptc-miR396c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 30 ttccacagctttcttgaact 49
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
