miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
cress)
Length = 136
Score = 75.0 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 95 ggaaatgaaaaagaaagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||||||||||||||||
Sbjct: 45 ggaaatgaaaaagaaagttcaagaaagctgtggaaaa 9
Score = 56.8 bits (28), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 2 ttgtcatgttttcccacagctttsttgagc 31
||||||||||||||||||||||| ||||||
Sbjct: 136 ttgtcatgttttcccacagctttcttgagc 107
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 54.8 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaaatat 135
|||||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaaatat 5
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 50.8 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 100 tgaaaaagaaagttcaagaaagctgtggaaaaa 132
||||||| ||||||||||||||||||||||||
Sbjct: 40 tgaaaaaagaagttcaagaaagctgtggaaaaa 8
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 48.8 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 109 aagttcaagaaagctgtggaaaaa 132
||||||||||||||||||||||||
Sbjct: 74 aagttcaagaaagctgtggaaaaa 97
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 48.8 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaaa 132
||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaaa 8
>RF00648;MIR396;CAAP02000221.1/3577-3471 29760:Vitis vinifera
Length = 107
Score = 48.8 bits (24), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 catgttttcccacagctttsttgagc 31
||||||||||||||||||| ||||||
Sbjct: 103 catgttttcccacagctttcttgagc 78
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly pine)
Length = 108
Score = 48.8 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 108 aaagttcaagaaagctgtggaaaa 131
||||||||||||||||||||||||
Sbjct: 32 aaagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 46.8 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
Length = 157
Score = 46.8 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.8 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.8 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 46.8 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 46.8 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaaa 131
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaa 9
>RF00648;MIR396;FJ647794.1/154-54 64478:Actinidia arguta
Length = 101
Score = 44.8 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 111 gttcaagaaagctgtggaaaaa 132
||||||||||||||||||||||
Sbjct: 72 gttcaagaaagctgtggaaaaa 93
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 44.8 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 110 agttcaagaaagctgtggaaaa 131
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagctgtggaaaa 9
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 44.8 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaa 130
||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaa 10
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.8 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 109 aagttcaagaaagctgtggaaa 130
||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaa 10
