miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51347_ppe-miR408:pmrd
Length = 105
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 3 actgataagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgataagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctg 60
Query: 63 ttgtggctctactcatgcactgcctcttccctggctgccgtcct 106
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtggctctactcatgcactgcctcttccctggctgccgtcct 104
>51762_ptc-miR408:pmrd
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 61 tgttgtggctctactcatgcactgcctcttccctggct 98
|||| ||||||||| |||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>54892_vvi-miR408:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 58 agctgttgtggctctactcatgcactgcctcttccctggct 98
||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 58 agctgtttttgctctacccatgcactgcctcttccctggct 98
>54389_rco-miR408:pmrd
Length = 129
Score = 56.0 bits (28), Expect = 5e-09
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 9 aagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtgg 68
||||| ||||||||| || |||||||||| | | | ||||||||| | ||||| |||
Sbjct: 25 aagactgggaacaggcagtgcatggatggggctactaacagaaaac---atctgttttgg 81
Query: 69 ctctactcatgcactgcctcttccctggct 98
|||||| | |||||||||||||||||||||
Sbjct: 82 ctctacccctgcactgcctcttccctggct 111
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 61 tgttgtggctctactcatgcactgcctcttccctg 95
|||| ||||||||| ||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 60 ctgttgtggctctactcatgcactgcctcttccctggct 98
||||| || |||||| |||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggct 5
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 10 agacagggaacaggtagagcatggatggagtt 41
|||||||||||| | ||||||||||| |||||
Sbjct: 95 agacagggaacaagcagagcatggattgagtt 64
>47031_ath-miR408:pmrd
Length = 218
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 60 ctgttgtggctctactcatgcactgcctcttccctggct 98
||||| || |||||| |||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggct 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 10 agacagggaacaggtagagcatggatggagtt 41
|||||||||||| | ||||||||||| |||||
Sbjct: 51 agacagggaacaagcagagcatggattgagtt 82
>51397_ppt-miR408b:pmrd
Length = 144
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 ctcatgcactgcctcttccctggct 98
|||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggct 114
>54585_smo-miR408:pmrd
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 atgcactgcctcttccctggctgc 100
||||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggctgc 99
>48428_cpt-miR408:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 catgcactgcctcttccctggct 98
|||||||||||||||||||||||
Sbjct: 69 catgcactgcctcttccctggct 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 aagacagggaacaggtagagcatggatgga 38
||||| ||||||||| ||||||||||||||
Sbjct: 7 aagacggggaacaggcagagcatggatgga 36
>46892_aqc-miR408:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 76 catgcactgcctcttccctggct 98
|||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggct 1
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 atgcactgcctcttccctggct 98
||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85
>48584_gma-miR408a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 60 ctgttgtggctctactcatgcactgcctcttccctggc 97
||||||||||| |||||||||||||| |||||||||
Sbjct: 83 ctgttgtggctacgctcatgcactgcctgttccctggc 120
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173
>54690_tae-miR408:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157
>54649_sof-miR408d:pmrd
Length = 215
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggct 197
>54648_sof-miR408c:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 78 tgcactgcctcttccctggct 98
|||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 catgcactgcctcttccctgg 96
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
