miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 61 tgttgtggctctactcatgcactgcctcttccctggc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 60 ctgttgtggctctactcatgcactgcctcttccctggct 98
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 60.0 bits (30), Expect = 6e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 61 tgttgtggctctactcatgcactgcctcttccctggct 98
|||| ||||||||| |||||||||||||||||||||||
Sbjct: 64 tgttttggctctacccatgcactgcctcttccctggct 101
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 58 agctgttgtggctctactcatgcactgcctcttccctggct 98
||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 68 agctgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 56.0 bits (28), Expect = 9e-08
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 9 aagacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtgg 68
||||| ||||||||| || |||||||||| | | | ||||||||| | ||||| |||
Sbjct: 16 aagactgggaacaggcagtgcatggatggggctactaacagaaaac---atctgttttgg 72
Query: 69 ctctactcatgcactgcctcttccctggct 98
|||||| | |||||||||||||||||||||
Sbjct: 73 ctctacccctgcactgcctcttccctggct 102
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 60 ctgttgtggctctactcatgcactgcctcttccctggct 98
||||||||||| |||||||||||||||||||||||||
Sbjct: 101 ctgttgtggctacgctcatgcactgcctcttccctggct 139
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 ctctactcatgcactgcctcttccctggct 98
|||||| |||||||||||||||||||||||
Sbjct: 79 ctctacccatgcactgcctcttccctggct 108
