miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48304_ave-miR1120:pmrd
Length = 85
Score = 79.8 bits (40), Expect = 2e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataagagcgtttatatcactat 50
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2 agtactccctctgtaaagaaatataagagcgtttagatcactat 45
Score = 67.9 bits (34), Expect = 8e-13
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatca 46
||||||||||||||||||||||||||||||||| ||||
Sbjct: 82 tactccctctgtaaagaaatataagagcgtttagatca 45
>54696_tae-miR1121:pmrd
Length = 98
Score = 69.9 bits (35), Expect = 2e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 7 agtactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 95 agtactccctccgtaaagaaatataagagcgtttagatcacta 53
Score = 58.0 bits (29), Expect = 8e-10
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcact 48
||||||||||||||||||||||| |||| ||||| ||||||
Sbjct: 8 gtactccctctgtaaagaaatattagagtgtttagatcact 48
>54753_tae-miR2033b:pmrd
Length = 72
Score = 61.9 bits (31), Expect = 5e-11
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcactata 51
|||||| |||||||||||||||||||| ||||| |||||||||
Sbjct: 72 tactccttctgtaaagaaatataagagtgtttagatcactata 30
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgt 38
||||||||| |||||||||||||||||||
Sbjct: 1 tactccctccataaagaaatataagagcgt 30
>54752_tae-miR2033a:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatat 30
||||||||||||||||||||||
Sbjct: 96 tactccctctgtaaagaaatat 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15 ctctgtaaagaaatataaga 34
||||||||||||||||||||
Sbjct: 60 ctctgtaaagaaatataaga 41
>54761_tur-miR1120:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| ||||||||| | |||| |||||||
Sbjct: 84 tactccctctgtaaactaatataagaccttttagatcacta 44
>54756_tmo-miR1120:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| ||||||||| | |||| |||||||
Sbjct: 85 tactccctctgtaaactaatataagaccttttagatcacta 45
