miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 79.8 bits (40), Expect = 4e-15
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 7 agtactccctctgtaaagaaatataagagcgtttatatcactat 50
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 85 agtactccctctgtaaagaaatataagagcgtttagatcactat 42
Score = 67.9 bits (34), Expect = 1e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatca 46
||||||||||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca 42
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 88 gtactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 65.9 bits (33), Expect = 6e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||||||||||||||||||| |||||| |||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 65.9 bits (33), Expect = 6e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||||||||||||||||| |||||||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcacta 49
Score = 63.9 bits (32), Expect = 2e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcact 48
|||| |||||||||||||||||||||||||||| ||||||
Sbjct: 5 tactacctctgtaaagaaatataagagcgtttagatcact 44
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 65.9 bits (33), Expect = 6e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 6 tagtactccctctgtaaagaaatataagagcgtttatatcactat 50
|||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 2 tagtactccctctgtaaactaatataagagcgtttagatcactat 46
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgttta 41
||||||||| ||||| ||||||||||||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgttta 57
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 63.9 bits (32), Expect = 2e-10
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 7 agtactccctctgtaaagaaatataagagcgtttatatcactat 50
|||| |||||| ||||||||||||||||||||||| ||||||||
Sbjct: 91 agtagtccctcagtaaagaaatataagagcgtttagatcactat 48
Score = 56.0 bits (28), Expect = 6e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 6 tagtactccctctgtaaagaaatataagagcgttta 41
|||||||||||||||||| ||||||||| |||||||
Sbjct: 2 tagtactccctctgtaaacaaatataagggcgttta 37
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 9e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataagagcgttta 41
||||||||||| |||||||||||||||||||||||
Sbjct: 3 agtactccctcggtaaagaaatataagagcgttta 37
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagcgttta 41
||||||||||| ||||||||||||||||| ||||
Sbjct: 90 gtactccctctataaagaaatataagagcattta 57
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 61.9 bits (31), Expect = 9e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttata 43
|||||||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttata 39
Score = 58.0 bits (29), Expect = 1e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatataagagcgtttatatcactata 51
|||||||||||||||||||||||| | |||| |||||||||
Sbjct: 76 ctccctctgtaaagaaatataagatcatttagatcactata 36
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 60.0 bits (30), Expect = 4e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||| ||||||||||||||||||||||| || |||||||
Sbjct: 4 gtactccttctgtaaagaaatataagagcgtctagatcacta 45
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgttta 41
||||||||| ||||||||||||||||| |||||
Sbjct: 89 tactccctccgtaaagaaatataagagtgttta 57
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 1e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||| |||||||||||||||||| |||| |||||||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcacta 49
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| ||||||||||| || | |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcacta 45
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 58.0 bits (29), Expect = 1e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgttta 41
||||||||| |||||||||||||||||||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgttta 37
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 58.0 bits (29), Expect = 1e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| |||||||||||||||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcacta 45
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 56.0 bits (28), Expect = 6e-08
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 6 tagtactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||||||||||| ||||||||||| |||| |||||||
Sbjct: 91 tagtactccctctgtaaactaatataagagcatttagatcacta 48
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||||| |||||||||| ||||| |||||||
Sbjct: 3 agtactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||||| ||||||||||| |||| |||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcttttagatcacta 45
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatataagagcgtttatatcacta 49
||||||||| ||||||||||||||||| |||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcacta 45
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 7 agtactccctctgtaaagaaatataagagcgttta 41
||||||||||||||||| ||||||||||||||||
Sbjct: 3 agtactccctctgtaaactaatataagagcgttta 37
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 26 aatataagagcgtttatatcactat 50
|||||||||||||||| ||||||||
Sbjct: 67 aatataagagcgtttagatcactat 91
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 7 agtactccctctgtaaagaaatataagagcgttt 40
||||||||||||||||| |||||||||||||||
Sbjct: 98 agtactccctctgtaaactaatataagagcgttt 65
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 13 ccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||| ||||||||||| |||| |||||||
Sbjct: 9 ccctctgtaaactaatataagagcatttagatcacta 45
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 52.0 bits (26), Expect = 9e-07
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcactat 50
||||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactat 48
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataaga 34
||||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaagaaatataaga 64
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||| ||| |||||||||||| ||||| |||||||
Sbjct: 4 gtactccctccgtacagaaatataagaatgtttagatcacta 45
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| |||||||||||| ||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcacta 45
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| |||||||||||| ||| |||||||
Sbjct: 89 tactccctctgtaaactaatataagagcgcttagatcacta 49
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||||| || |||||| |||||||||| |||||||
Sbjct: 5 tactccctctgtgaataaatatgagagcgtttagatcacta 45
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||| |||||| |||||||||||||||| |||||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcacta 52
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| ||||||||||| |||| |||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcacta 45
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcactat 50
||||||||| ||||| |||||||||||||||| || |||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactat 48
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgttta 41
||||||||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgttta 37
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 50.1 bits (25), Expect = 3e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||||||| ||||||||||||||| |||||||
Sbjct: 5 tactccctctgtaaattaatataagagcgtttggatcacta 45
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 26 aatataagagcgtttatatcactat 50
|||||||||||||||| ||||||||
Sbjct: 72 aatataagagcgtttagatcactat 48
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 10 actccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||| ||||| |||||||||||||||| |||||||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcacta 49
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 6 tagtactccctctgtaaagaaatataagagcgttta 41
|||||||||||| ||||| ||||||||||||||||
Sbjct: 2 tagtactccctccgtaaactaatataagagcgttta 37
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcactat 50
|||| |||||||||| ||||||||||| |||| ||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactat 48
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 6 tagtactccctctgtaaagaaatataagagcgttta 41
|||||||||||||||||| |||||||||| |||||
Sbjct: 2 tagtactccctctgtaaactaatataagagtgttta 37
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 6 tagtactccctctgtaaagaaatataagagcgttta 41
|||||||||||| ||||| ||||||||||||||||
Sbjct: 90 tagtactccctccgtaaactaatataagagcgttta 55
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 19 gtaaagaaatataagagcgtttatatcacta 49
|||||||||||||||| |||||| |||||||
Sbjct: 15 gtaaagaaatataagaacgtttagatcacta 45
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||| || ||||||||||| |||||||| || |||||||
Sbjct: 92 tactccatccgtaaagaaatacaagagcgtctagatcacta 52
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||||||||| ||||||||| | |||| |||||||
Sbjct: 90 gtactccctctgtaaactaatataagaccttttagatcacta 49
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||||| |||| |||||||||| ||||| |||||||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttagatcacta 45
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcactat 50
||||||||| ||||| |||||||||||||||| | ||||||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagaacactat 48
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||||||||||||| ||||||||| | |||| |||||||
Sbjct: 92 gtactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcactat 50
||||||||||||||| ||||||| ||| |||| ||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcactat 46
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
||||||||| ||||| ||||||||||| |||| |||||||
Sbjct: 87 tactccctccgtaaactaatataagagcatttagatcacta 47
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagagcgttta 41
||||||||| ||||| ||||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgttta 37
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagagcgtttatatcacta 49
|||||| |||||||| | |||||||||||||| |||||||
Sbjct: 89 tactccgtctgtaaactactataagagcgtttagatcacta 49
