miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 94

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                        
Query: 14 tagtactccctccgacccaaaataagtgtc 43
          ||||||||||||||| ||||||||||||||
Sbjct: 93 tagtactccctccgatccaaaataagtgtc 64



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 20 tccctccgacccaaaataagtgtcgcggtttt 51
          ||||||||| ||||||||||||||| ||||||
Sbjct: 8  tccctccgatccaaaataagtgtcgtggtttt 39




>RF00906;MIR1122;EU730894.1/50807-50703 15368:Brachypodium
          distachyon
          Length = 105

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 17 tactccctccgacccaaaataagtgtcgcggttttgaa 54
          |||| ||||||| |||||||||||||||| ||||||||
Sbjct: 5  tactacctccgatccaaaataagtgtcgcagttttgaa 42



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 17  tactccctccgacccaaaataagtgtcgcggttttgaacta 57
           |||| ||||||| |||||||||||||| | |||||||||||
Sbjct: 101 tactgcctccgatccaaaataagtgtctcagttttgaacta 61




>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
          Length = 115

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 13  ttagtactccctccgacccaaaataagtg 41
           ||||||||||||||| |||||||||||||
Sbjct: 115 ttagtactccctccgtcccaaaataagtg 87




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 17 tactccctccgacccaaaataagtgtcgc 45
          ||||||||||| |||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtcgc 33



 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 17  tactccctccgacccaaaataagtgtcgc 45
           ||||||||||| |||||||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgc 74




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 16  gtactccctccgacccaaaataagtgtc 43
           |||||||||||| |||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtc 75




>RF00906;MIR1122;EF059989.1/239319-239424 29664:Brachypodium
          sylvaticum
          Length = 106

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 14 tagtactccctccgacccaaaataagtgtcgc 45
          ||||||||||||||| ||| ||||||||||||
Sbjct: 2  tagtactccctccgatccataataagtgtcgc 33




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 17  tactccctccgacccaaaataagtgtc 43
           ||||||||||| |||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
          (bread wheat)
          Length = 104

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 17  tactccctccgacccaaaataagtgtc 43
           ||||||||||| |||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtc 74




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 105

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 17  tactccctccgacccaaaataagtgtc 43
           ||||||||||| |||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75




>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 86

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctccgacccaaaataagtgtc 43
          ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31




>RF00906;MIR1122;AY821690.1/1219-1313 4485:Aegilops comosa
          Length = 95

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 17 tactccctccgacccaaaataagtgtcgcggtttt 51
          |||||||||||| |||||||||| |||| ||||||
Sbjct: 5  tactccctccgatccaaaataagcgtcgtggtttt 39




>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
          Japonica Group
          Length = 246

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 gtactccctccgacccaaaataagtg 41
          |||||||||||| |||||||||||||
Sbjct: 1  gtactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
          Japonica Group
          Length = 247

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 17 tactccctccgacccaaaataagtgt 42
          ||||||||||| ||||||||||||||
Sbjct: 2  tactccctccgtcccaaaataagtgt 27




>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 115

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 16  gtactccctccgacccaaaataagtg 41
           |||||||||||| |||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87




>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 14  tagtactccctccgacccaaaataagtgtcgcggtttt 51
           ||||||| ||| || ||||||||||||||||| |||||
Sbjct: 105 tagtacttccttcgtcccaaaataagtgtcgctgtttt 68




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 14 tagtactccctccgacccaaaataagtgtc 43
          |||||||||||||| | |||||||||||||
Sbjct: 2  tagtactccctccgtctcaaaataagtgtc 31