miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 10 tagtactccctccgacccaaaataagtgtc 39
||||||||||||||| ||||||||||||||
Sbjct: 93 tagtactccctccgatccaaaataagtgtc 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 16 tccctccgacccaaaataagtgtcgcggtttt 47
||||||||| ||||||||||||||| ||||||
Sbjct: 8 tccctccgatccaaaataagtgtcgtggtttt 39
>RF00906;MIR1122;EU730894.1/50807-50703 15368:Brachypodium
distachyon
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtcgcggttttgaa 50
|||| ||||||| |||||||||||||||| ||||||||
Sbjct: 5 tactacctccgatccaaaataagtgtcgcagttttgaa 42
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 13 tactccctccgacccaaaataagtgtcgcggttttgaacta 53
|||| ||||||| |||||||||||||| | |||||||||||
Sbjct: 101 tactgcctccgatccaaaataagtgtctcagttttgaacta 61
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 ttagtactccctccgacccaaaataagtg 37
||||||||||||||| |||||||||||||
Sbjct: 115 ttagtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtcgc 41
||||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgc 33
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgacccaaaataagtgtcgc 41
||||||||||| |||||||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgc 74
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 gtactccctccgacccaaaataagtgtc 39
|||||||||||| |||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;EF059989.1/239319-239424 29664:Brachypodium
sylvaticum
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 tagtactccctccgacccaaaataagtgtcgc 41
||||||||||||||| ||| ||||||||||||
Sbjct: 2 tagtactccctccgatccataataagtgtcgc 33
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtc 74
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtc 39
||||||||||| |||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AY821690.1/1219-1313 4485:Aegilops comosa
Length = 95
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgtcgcggtttt 47
|||||||||||| |||||||||| |||| ||||||
Sbjct: 5 tactccctccgatccaaaataagcgtcgtggtttt 39
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 gtactccctccgacccaaaataagtg 37
|||||||||||| |||||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgacccaaaataagtgt 38
||||||||||| ||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 gtactccctccgacccaaaataagtg 37
|||||||||||| |||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 10 tagtactccctccgacccaaaataagtgtcgcggtttt 47
||||||| ||| || ||||||||||||||||| |||||
Sbjct: 105 tagtacttccttcgtcccaaaataagtgtcgctgtttt 68
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 tagtactccctccgacccaaaataagtgtc 39
|||||||||||||| | |||||||||||||
Sbjct: 2 tagtactccctccgtctcaaaataagtgtc 31
