miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 91.7 bits (46), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaac 63
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcactactttagtgatctaaac 31
Score = 63.9 bits (32), Expect = 4e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtgtttagatcactactttagtgatctaaacgcttt 68
||||||||| ||||| |||| |||||||||||||||||| ||||||||||||| || |
Sbjct: 5 tactccctccgtaaataaatgtaagtgtttagatcactaaagtagtgatctaaacactct 64
Query: 69 tata 72
||||
Sbjct: 65 tata 68
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/68 (91%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 7 actactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaacg 64
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct: 91 actactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacg 32
Query: 65 cttttata 72
|| |||||
Sbjct: 31 ctcttata 24
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 57/62 (91%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 13 ccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgctttta 70
||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||
Sbjct: 85 ccctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctctta 26
Query: 71 ta 72
||
Sbjct: 25 ta 24
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 6 tactactccctctgtaaagaaatata--agtgtttagatcactactttagtgatctaaac 63
||||||| |||||||||||||||||| || |||||||||||| |||||||||||||
Sbjct: 2 tactactacctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaac 61
Query: 64 gcttttata 72
||| |||||
Sbjct: 62 gctcttata 70
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
|||||||||| |||||||||||||| | ||||||| |||||||||||| ||||||||||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgct 30
Query: 67 tttata 72
|||||
Sbjct: 29 cttata 24
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 35 gtttagatcactactttagtgatctaaacgcttttata 72
|||||||||||||||||||||||||||||||| |||||
Sbjct: 61 gtttagatcactactttagtgatctaaacgctcttata 24
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 52/57 (91%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaac 63
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaac 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcacta 47
||||||||| ||| ||||||||||| ||||||||||||||
Sbjct: 5 tactccctccgtacagaaatataagaatgtttagatcacta 45
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaacgct 66
||||||||| ||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtgt--ttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | || |||||||||||||||||||||||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||| ||||||||||||||| | |||||||||||| ||||||||| || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 67 tttata 72
|||||
Sbjct: 29 cttata 24
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaacgct 66
||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||| | |
Sbjct: 5 tactccctccgtaaactaatataagagtgtttagattactactttagtgatctaaatgtt 64
Query: 67 tttata 72
||||||
Sbjct: 65 tttata 70
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatata--agtgtttagatcactactttagtgatctaaacgct 66
||||||||| ||||||||||||| || |||||| ||||||||| |||||||| ||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagt--gtttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcactattttagtattctaaacgct 30
Query: 67 tttata 72
||||||
Sbjct: 29 tttata 24
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | ||||||||||||||| | |||||||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcactacttaa-tgatctaaacgct 30
Query: 67 tttata 72
||||||
Sbjct: 29 tttata 24
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||| ||||| |||||||| | ||||||| |||||||||||||||||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/56 (89%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaa 62
||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaa 34
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 36 tttagatcactactttagtgatctaaacgcttttata 72
||||||||||||||||||||||||||| ||| |||||
Sbjct: 60 tttagatcactactttagtgatctaaaagctcttata 24
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 44/48 (91%), Gaps = 2/48 (4%)
Strand = Plus / Plus
Query: 15 ctctgtaaagaaatataagtg--tttagatcactactttagtgatcta 60
||||||||| ||||||||| | |||||||||||||||||||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatcta 58
Score = 46.1 bits (23), Expect = 8e-05
Identities = 47/54 (87%), Gaps = 2/54 (3%)
Strand = Plus / Minus
Query: 21 aaagaaatataag--tgtttagatcactactttagtgatctaaacgcttttata 72
||||||||||||| ||| |||||||||| |||||||||||||||| |||||
Sbjct: 77 aaagaaatataagagtgtctagatcactaaagtagtgatctaaacgctcttata 24
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Minus
Query: 7 actactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacg 64
||||||||||| ||||| |||||||| | ||||||||||||||| ||||||||||| |
Sbjct: 89 actactccctccgtaaactaatataagagcatttagatcactactt-agtgatctaaatg 31
Query: 65 cttttata 72
||||||||
Sbjct: 30 cttttata 23
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/56 (89%), Gaps = 2/56 (3%)
Strand = Plus / Minus
Query: 12 tccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgc 65
|||||| ||||||||||||||| | |||||||||||| ||||| |||||||||||
Sbjct: 86 tccctcagtaaagaaatataagagcgtttagatcactattttagagatctaaacgc 31
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataa--gtgtttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | ||||||||| ||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
|||| |||||||||| |||||||| | |||||||||||| |||||||| |||||||||
Sbjct: 89 tacttcctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgct 30
Query: 67 tttata 72
|||||
Sbjct: 29 cttata 24
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| |||||||||||||| |||||| || |||| ||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcactagtttagtaatttaaaaact 64
Query: 67 tttata 72
||||||
Sbjct: 65 tttata 70
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | |||||||||||| |||||| ||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcacta 47
||||||||||||||||||||||||| |||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcacta 45
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/41 (92%), Gaps = 2/41 (4%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatata--agtgtttagatcacta 47
||||||||||||||||||||||| || |||||||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcacta 43
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag 33
|||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataag 29
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 35 gtttagatcactactttagtgatctaaacgcttttata 72
||||||||||||| |||||||||| ||||||| |||||
Sbjct: 61 gtttagatcactattttagtgatccaaacgctcttata 24
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/67 (85%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 8 ctactccctctgtaaagaaatata--agtgtttagatcactactttagtgatctaaacgc 65
|||||||||||||||| |||||| || |||| |||||||| |||||||||||||||
Sbjct: 4 ctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaacgc 63
Query: 66 ttttata 72
| |||||
Sbjct: 64 tcttata 70
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Minus
Query: 7 actactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacg 64
||||||||||| ||||| |||||||| | |||||| ||||| |||||||||||||||
Sbjct: 91 actactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaaca 32
Query: 65 cttttata 72
|| |||||
Sbjct: 31 ctcttata 24
Score = 46.1 bits (23), Expect = 8e-05
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaacgct 66
|||||||||| |||| |||||||| |||||||||||||| ||||| ||||||||||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 36 tttagatcactactttagtgatctaaacgcttttata 72
|||||| |||||||||||| ||||||||||| |||||
Sbjct: 60 tttagaacactactttagtaatctaaacgctcttata 24
Score = 46.1 bits (23), Expect = 8e-05
Identities = 59/70 (84%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 5 gtactactccctctgtaaagaaatata--agtgtttagatcactactttagtgatctaaa 62
||||||||||||||||||| |||||| || |||||||| |||| ||||| ||||||
Sbjct: 1 gtactactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaa 60
Query: 63 cgcttttata 72
|||||||||
Sbjct: 61 tgcttttata 70
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataag 33
|||||||||||||||||||||||||
Sbjct: 5 tactccctctgtaaagaaatataag 29
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 ctccctctgtaaagaaatataag 33
|||||||||||||||||||||||
Sbjct: 76 ctccctctgtaaagaaatataag 54
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/67 (85%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 8 ctactccctctgtaaagaaatataag--tgtttagatcactactttagtgatctaaacgc 65
|||||||||| ||||| |||||||| |||||||||||||| |||| |||| |||| ||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 66 ttttata 72
| |||||
Sbjct: 64 tcttata 70
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||||||||| |||||||| | |||||||||||| |||| |||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 67 tttata 72
|||||
Sbjct: 65 cttata 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 56/66 (84%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 9 tactccctctgtaaagaaatataagtg--tttagatcactactttagtgatctaaacgct 66
||||||||| ||||| |||||||| | ||||||| |||| |||||||||||||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 67 tttata 72
|||||
Sbjct: 29 cttata 24
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 35 gtttagatcactactttagtgatctaaacgcttttata 72
||||||||||||| |||| ||||||||| ||| |||||
Sbjct: 78 gtttagatcactattttaatgatctaaatgctcttata 115
