miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY663391.1/33436-33528 4571:Triticum turgidum
          Length = 93

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
          ||||| ||||||||||| |||||||||||||||
Sbjct: 89 tactccctccgtcccataatgtaagacgttttt 57




>RF00906;MIR1122;AF459639.1/39710-39600 4568:Triticum monococcum
          Length = 111

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
          ||||| ||||||||||| |||||||||||||||
Sbjct: 5  tactccctccgtcccataatgtaagacgttttt 37



 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 12  ctactcactccgtcccatgatgtaagacgttttt 45
           |||||| ||||||||||| ||||| |||||||||
Sbjct: 108 ctactccctccgtcccataatgtaggacgttttt 75




>RF00906;MIR1122;EF397435.1/125-217 4588:Lophopyrum elongatum
          Length = 93

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 20 tccgtcccatgatgtaagacgtttttgcaagct 52
          |||||||||| |||||| |||||||||||||||
Sbjct: 12 tccgtcccataatgtaatacgtttttgcaagct 44




>RF00906;MIR1122;AB298184.1/14323-14229 4565:Triticum aestivum
          (bread wheat)
          Length = 95

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 19 ctccgtcccatgatgtaagacgttttt 45
          ||||||||||| |||||||||||||||
Sbjct: 85 ctccgtcccataatgtaagacgttttt 59




>RF00906;MIR1122;EU187471.1/291-190 40247:Dasypyrum villosum
          Length = 102

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 19 ctccgtcccatgatgtaagacgttttt 45
          ||||||||||| |||||||||||||||
Sbjct: 11 ctccgtcccataatgtaagacgttttt 37




>RF00906;MIR1122;DQ247823.1/803-901 4487:Aegilops searsii
          Length = 99

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 19 ctccgtcccatgatgtaagacgttttt 45
          ||||||||||| |||||||||||||||
Sbjct: 90 ctccgtcccataatgtaagacgttttt 64




>RF00906;MIR1122;FJ436986.1/65665-65790 37682:Aegilops tauschii
          Length = 126

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 19 ctccgtcccatgatgtaagacgttttt 45
          ||||||||||| |||||||||||||||
Sbjct: 61 ctccgtcccataatgtaagacgttttt 35




>RF00906;MIR1122;DQ247832.1/803-901 4487:Aegilops searsii
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 19 ctccgtcccatgatgtaagacgtttt 44
          ||||||||||| ||||||||||||||
Sbjct: 90 ctccgtcccataatgtaagacgtttt 65




>RF00906;MIR1122;EU626553.1/80596-80503 4572:Triticum urartu
          Length = 94

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                           
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
          ||||| ||||||||||| ||||||||| |||||
Sbjct: 90 tactccctccgtcccataatgtaagacattttt 58




>RF00906;MIR1122;EF426564.1/124146-124054 4571:Triticum turgidum
          Length = 93

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
          ||||| ||||||||||| |||||||| ||||||
Sbjct: 5  tactccctccgtcccataatgtaagaggttttt 37




>RF00906;MIR1122;DQ537335.1/54883-54975 4565:Triticum aestivum
          (bread wheat)
          Length = 93

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                           
Query: 13 tactcactccgtcccatgatgtaagacgttttt 45
          ||||| ||||||||||| |||||||||| ||||
Sbjct: 5  tactccctccgtcccataatgtaagacgctttt 37




>RF00906;MIR1122;AAAA02024400.1/2538-2637 39946:Oryza sativa Indica
           Group
          Length = 100

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  ctgggacggagggagtacatg 71
           |||||||||||||||||||||
Sbjct: 80  ctgggacggagggagtacatg 100