miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 45 tgatctaaacgctcttatatttctttacaaagggagtatat 85
||||||||||||||||||||||||||||| |||||||||||
Sbjct: 42 tgatctaaacgctcttatatttctttacagagggagtatat 2
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 43 tagtgatctaaacgctcttatatttctttacagagggagta 83
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagtata 84
||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 48 gtagtgatctaaacgctcttatatttctttacagagggtgtata 91
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 43 agtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 44 agtgatctaaacgctcttatatttctttacagaggtagta 5
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagtat 83
|||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttctttacagagggagtat 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttcttt 70
||||||||||||| | ||||||||||||||
Sbjct: 54 gtagtgatctaaatgatcttatatttcttt 83
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 46 gtagtgatctaaacactcttatatttctttacagagggagta 87
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagtat 83
||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 46 gtagtgacctaaacgctcttatatttctttacggagggagtat 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 43 agtgatctaaacgctcttatatttctttac 72
|||||||| ||||||||||||||| |||||
Sbjct: 50 agtgatctgaacgctcttatatttgtttac 79
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttac 72
|||||||||||||||||||||||||||||||
Sbjct: 49 tagtgatctaaacgctcttatatttctttac 79
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 46 gatctaaacgctcttatatttctttacaaagggagta 82
||||||||||| ||||||||| |||||| ||||||||
Sbjct: 41 gatctaaacgcccttatatttgtttacagagggagta 5
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 60.0 bits (30), Expect = 6e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagtat 83
|||||||||||||||||||||||| |||||| |||||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagtat 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatt 65
|||||||||||||||||||||||||
Sbjct: 48 gtagtgatctaaacgctcttatatt 72
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||| |||||||||||||||||| ||||||||
Sbjct: 49 tagtgatctaaatgctcttatatttctttacggagggagta 89
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagtat 83
|||||||||| || ||||||||||| |||||| |||||||||
Sbjct: 46 gtagtgatctgaatgctcttatattagtttacagagggagtat 4
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||||||||||||||| |||||| ||||||||
Sbjct: 52 tagtgatctaaacgctcttatattattttacatagggagta 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagtat 83
||||||||||||||||||| |||||| || ||| |||||||||
Sbjct: 46 gtagtgatctaaacgctctcatatttattcacagagggagtat 4
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 45 tagtgctctaaacgctcttatatttctttaccgagggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||| ||||||| ||||||||||||||||| | ||||||||
Sbjct: 48 gtagttatctaaatgctcttatatttctttatagagggagta 89
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttaca 73
|||||||||||||||||||||||||| ||||||
Sbjct: 46 gtagtgatctaaacgctcttatatttgtttaca 14
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||| ||||||||||||||||||||| | ||||||
Sbjct: 45 tagtgatctagacgctcttatatttctttacagaaggagta 5
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 48 gtagttatctaaacactcttatatttctttacggagggagta 89
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||||||||||||||| |||||| ||||||||
Sbjct: 45 tagtgatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttac 72
||||||||||||||| ||||||||||||||||
Sbjct: 46 gtagtgatctaaacgttcttatatttctttac 15
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagtatat 85
|||||||||| |||||||| ||||||||||| | |||||||||
Sbjct: 52 tagtgatctagacgctcttgtatttctttacggatggagtatat 95
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagtatat 85
|||||||||||| | ||||||||||||||||| |||||| ||||
Sbjct: 38 tagtgatctaaatgatcttatatttctttacagagggagaatat 81
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 50 taaacgctcttatatttctttacaaagggagtat 83
|||||| ||||||||||||||||| |||||||||
Sbjct: 37 taaacgatcttatatttctttacagagggagtat 4
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagtat 83
|||||||||||| |||||||||||| |||||| |||||||||
Sbjct: 46 gtagtgatctaagcgctcttatattagtttacagagggagtat 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||| |||||||||||| |||||| ||||||||
Sbjct: 49 tagtgatctaagcgctcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 47 gtagtgatctaaatgctcttatattagtttacagagggagta 88
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||| ||||||| | ||||||||||||||||| ||||||||
Sbjct: 48 gtagttatctaaatgatcttatatttctttacagagggagta 89
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||||| ||||||||| |||||| ||||||||
Sbjct: 49 tagtgatctaaacgttcttatattagtttacagagggagta 89
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 45 tagtgatctaaacactcttatattagtttacagagggagta 5
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 45 tagtgatctaaatgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 45 tagtgatctaaaagctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||| ||||||||||||||||||| |||||| ||||||||
Sbjct: 45 tagtaatctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagta 82
|||||||| ||||||||||||||| |||||| ||||||||
Sbjct: 45 tagtgatccaaacgctcttatattaatttacagagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatt 65
||||||||||||||||||||||||
Sbjct: 49 tagtgatctaaacgctcttatatt 72
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatt 65
||||||||||||||||||||||||
Sbjct: 49 tagtgatctaaacgctcttatatt 72
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatt 65
||||||||||||||||||||||||
Sbjct: 90 tagtgatctaaacgctcttatatt 67
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 49 ctaaacgctcttatatttctttacaaagggagta 82
||||||||||||||||| |||||| ||||||||
Sbjct: 38 ctaaacgctcttatattagtttacagagggagta 5
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 45 tgatctaaacgctcttatatttctttacaaaggga 79
|||||| |||||||||||||| ||||||||||||
Sbjct: 42 tgatctcaacgctcttatattagtttacaaaggga 8
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagtat 83
||||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 46 gtagtaatctaaacgctcttatattaatttacggagggagtat 4
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttata 63
||||||||||||||||||||||
Sbjct: 49 tagtgatctaaacgctcttata 70
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 45 tgatctaaacgctcttatatttctttacaaagggagta 82
||||||||| ||| ||||||| |||||||||||||||
Sbjct: 52 tgatctaaatgcttttatattagtttacaaagggagta 89
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||||| | ||||||||| |||||| ||||||||
Sbjct: 48 gtagtgatctaaaaggtcttatattagtttacagagggagta 89
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagtat 83
|||||||||||| ||||||||||| |||||| ||| |||||
Sbjct: 49 tagtgatctaaatgctcttatattagtttacagaggaagtat 90
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||||| | ||||||||| |||||| ||||||||
Sbjct: 50 gtagtgatctaaaaggtcttatattagtttacagagggagta 91
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 42 tagtgatctaaacgctcttatatttctttacaaagggagtat 83
|||||||||||| ||| ||||||| |||||| |||||||||
Sbjct: 45 tagtgatctaaatgcttttatattagtttacagagggagtat 4
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 41 gtagtgatctaaacgctcttatatttctttacaaagggagta 82
||||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 46 gtagtgatctaaatgctcttatattagtttacggagggagta 87
