miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00842;MIR403;AASG02004953.1/3036-2929 3988:Ricinus communis
(castor bean)
Length = 108
Score = 60.0 bits (30), Expect = 8e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 79 atccgatggtgttagattcacgcacaaactcttgatttgtct 120
|||| |||||||||||||||||||||||||| |||| |||||
Sbjct: 67 atccaatggtgttagattcacgcacaaactcgtgatctgtct 108
>RF00842;MIR403;AASG02008767.1/6368-6472 3988:Ricinus communis
(castor bean)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 79 atccgatggtgttagattcacgcacaaactcttgat 114
|||| |||||||||||||||||||||||||| ||||
Sbjct: 64 atcccatggtgttagattcacgcacaaactcgtgat 99
>RF00842;MIR403;AARH01004350.1/142675-142577 3694:Populus
trichocarpa
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 76 accatccgatggtgttagattcacgcacaaactc 109
||||||| |||| |||||||||||||||||||||
Sbjct: 55 accatccaatggcgttagattcacgcacaaactc 88
>RF00842;MIR403;CAAP02000014.1/37272-37187 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 ggtgttagattcacgcacaaactc 109
||||||||||||||||||||||||
Sbjct: 52 ggtgttagattcacgcacaaactc 75
>RF00842;MIR403;AM431810.2/2208-2094 29760:Vitis vinifera
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 atctcaagtttgtgcgtgaatccgaccccatc 48
|||||||||||||||||||||| ||||||||
Sbjct: 5 atctcaagtttgtgcgtgaatcaaaccccatc 36
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gttagattcacgcacaaactcttgat 114
||||||||||||||||||||| ||||
Sbjct: 84 gttagattcacgcacaaactcgtgat 109
>RF00842;MIR403;CAAP02002017.1/13776-13691 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 86 ggtgttagattcacgcacaaactc 109
||||||||||||||||||||||||
Sbjct: 52 ggtgttagattcacgcacaaactc 75
>RF00842;MIR403;CAAP02000653.1/14609-14502 29760:Vitis vinifera
Length = 108
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 atggtgttagattcacgcacaaactc 109
||||| ||||||||||||||||||||
Sbjct: 72 atggtcttagattcacgcacaaactc 97
