miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41155_tcc-MIR403a:mirbase
Length = 126
Score = 77.8 bits (39), Expect = 2e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgtaatctgtcttttcat 131
|||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tgttagattcacgcacaaactcgtaatctgtcttttcat 122
>39896_aly-MIR403:mirbase
Length = 125
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 95 ttagattcacgcacaaactcgtaatctgtcttttc 129
|||||||||||||||||||||||||||||||||||
Sbjct: 91 ttagattcacgcacaaactcgtaatctgtcttttc 125
>40101_ath-MIR403:mirbase
Length = 135
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 95 ttagattcacgcacaaactcgtaatctgtcttt 127
|||||||||||||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtcttt 135
>41682_vvi-MIR403f:mirbase
Length = 108
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 95 ttagattcacgcacaaactcgtaatctgtct 125
|||||||||||||||||||||||||||||||
Sbjct: 78 ttagattcacgcacaaactcgtaatctgtct 108
>41460_ptc-MIR403a:mirbase
Length = 132
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 95 ttagattcacgcacaaactcgtaatctgtc 124
||||||||||||||||||||||||||||||
Sbjct: 103 ttagattcacgcacaaactcgtaatctgtc 132
>41156_tcc-MIR403b:mirbase
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgtaatctgtct 125
|||||||||||||||||||||||| ||||||||
Sbjct: 81 tgttagattcacgcacaaactcgtgatctgtct 113
>41679_vvi-MIR403c:mirbase
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 94 gttagattcacgcacaaactcgtaatctgtc 124
||||||||||||||||||||||| |||||||
Sbjct: 84 gttagattcacgcacaaactcgtgatctgtc 114
>41680_vvi-MIR403d:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgtaatctgtct 125
||||||||||||||||||||||| ||||||||
Sbjct: 54 tgttagattcacgcacaaactcgggatctgtct 86
>41678_vvi-MIR403b:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgtaatctgtct 125
||||||||||||||||||||||| ||||||||
Sbjct: 54 tgttagattcacgcacaaactcgggatctgtct 86
>41251_csi-MIR403:mirbase
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgtaatctgtct 125
|||||||||||||||||||||||| || |||||
Sbjct: 98 tgttagattcacgcacaaactcgtgatgtgtct 130
>40390_rco-MIR403b:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgt 116
||||||||||||||||||||||||
Sbjct: 71 tgttagattcacgcacaaactcgt 94
>40389_rco-MIR403a:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 tgttagattcacgcacaaactcgt 116
||||||||||||||||||||||||
Sbjct: 68 tgttagattcacgcacaaactcgt 91
>41681_vvi-MIR403e:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 94 gttagattcacgcacaaactcgtaatctgtc 124
|||||||||||||||||||||| |||||||
Sbjct: 84 gttagattcacgcacaaactcgcgatctgtc 114
>41677_vvi-MIR403a:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gttagattcacgcacaaactcgt 116
|||||||||||||||||||||||
Sbjct: 84 gttagattcacgcacaaactcgt 106
>41461_ptc-MIR403b:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 94 gttagattcacgcacaaactcgtaatctgtc 124
|||||||||||||||||||||| |||||||
Sbjct: 70 gttagattcacgcacaaactcgcgatctgtc 100
>41462_ptc-MIR403c:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 95 ttagattcacgcacaaactcg 115
|||||||||||||||||||||
Sbjct: 59 ttagattcacgcacaaactcg 79
