miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48349_bna-miR168:pmrd
          Length = 133

 Score =  218 bits (110), Expect = 8e-58
 Identities = 125/130 (96%)
 Strand = Plus / Plus

                                                                       
Query: 8   cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4   cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63

                                                                       
Query: 68  gttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 127
            ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ctttccatggttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 123

                     
Query: 128 tccgacgtga 137
           ||||||||||
Sbjct: 124 tccgacgtga 133




>46958_ath-miR168b:pmrd
          Length = 124

 Score = 93.7 bits (47), Expect = 3e-20
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                      
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
          |||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| 
Sbjct: 5  cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64

                                 
Query: 68 gttttcatggttggctcgtgagc 90
           || |||||||||| | ||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87




>54388_rco-miR168:pmrd
          Length = 156

 Score = 73.8 bits (37), Expect = 3e-14
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgattggct 52
          |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 5  cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49




>51650_ptc-miR168a:pmrd
          Length = 160

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 15 ctctgattcgcttggtgcaggtcgggaactgatt 48
          ||||||||||||||||||||||||||||||||||
Sbjct: 4  ctctgattcgcttggtgcaggtcgggaactgatt 37




>47339_ath-miRf10239-akr:pmrd
          Length = 129

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 92/110 (83%), Gaps = 5/110 (4%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 73
           |||||||||||||||||||||||||  ||| ||||||||||||| ||||  ||||    |
Sbjct: 10  gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 69

                                                             
Query: 74  atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
            |  |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 70  tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 119




>46957_ath-miR168a:pmrd
          Length = 138

 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 92/110 (83%), Gaps = 5/110 (4%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 73
           |||||||||||||||||||||||||  ||| ||||||||||||| ||||  ||||    |
Sbjct: 15  gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 74

                                                             
Query: 74  atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
            |  |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 75  tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124




>51651_ptc-miR168b:pmrd
          Length = 136

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 15 ctctgattcgcttggtgcaggtcgggaactgatt 48
          |||| |||||||||||||||||||||||||||||
Sbjct: 4  ctctaattcgcttggtgcaggtcgggaactgatt 37




>54375_pts-miR168b:pmrd
          Length = 140

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 22 tcgcttggtgcaggtcgggaactgatt 48
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>54374_pts-miR168a:pmrd
          Length = 118

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 22 tcgcttggtgcaggtcgggaactgatt 48
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>54366_ptr-miR168:pmrd
          Length = 118

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 22 tcgcttggtgcaggtcgggaactgatt 48
          |||||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactgatt 27




>46959_ath-miR168m:pmrd
          Length = 104

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 83/100 (83%), Gaps = 5/100 (5%)
 Strand = Plus / Plus

                                                                       
Query: 22  tcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----catg 76
           ||||||||||||||||||||||  ||| ||||||||||||| ||||  ||||    | | 
Sbjct: 1   tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60

                                                   
Query: 77  gttggctcgtgagcagggatcggatcccgccttgtatcaa 116
            |||| | |||||||||||| ||||||||||||| |||||
Sbjct: 61  attggtttgtgagcagggattggatcccgccttgcatcaa 100




>48560_gma-miR168:pmrd
          Length = 125

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 gcggcctctgattcgcttggtgcaggtcgggaac 43
          |||| |||| ||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>54802_vvi-miR168:pmrd
          Length = 132

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 ctctgattcgcttggtgcaggtcgggaac 43
          |||| ||||||||||||||||||||||||
Sbjct: 4  ctctaattcgcttggtgcaggtcgggaac 32




>48649_hte-miR168:pmrd
          Length = 140

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 tcgcttggtgcaggtcgggaactg 45
          ||||||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcgggaactg 24




>55000_zma-miR168b:pmrd
          Length = 104

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 97  cggatcccgccttgtatcaagtgaatc 123
           |||||||||||||| ||||||||||||
Sbjct: 62  cggatcccgccttgcatcaagtgaatc 88




>54436_sbi-miR168:pmrd
          Length = 106

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 99  gatcccgccttgtatcaagtgaatccgag 127
           |||||||||||| | ||||||||||||||
Sbjct: 66  gatcccgccttgcaccaagtgaatccgag 94




>54665_stu-miR168:pmrd
          Length = 133

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tcgcttggtgcaggtcggga 41
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20




>54546_sly-miR168:pmrd
          Length = 145

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 tcgcttggtgcaggtcggga 41
          ||||||||||||||||||||
Sbjct: 1  tcgcttggtgcaggtcggga 20