miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 121 bits (61), Expect = 3e-27
Identities = 94/105 (89%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggttttcatggt 78
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtggattcccatcat 75
Query: 79 tggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
|||| ||||||||||||| | |||||||||| ||||| ||||||
Sbjct: 76 tggcatgtgagcagggatctgctcccgccttgcatcaactgaatc 120
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 119 bits (60), Expect = 1e-26
Identities = 114/132 (86%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
|||||| ||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattgactgtcaccgccacgtgt 64
Query: 68 gttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 127
|| ||||| |||||| |||| | | ||||||||||||||||| ||||| |||||| |||
Sbjct: 65 tttctcatgattggcttgtgaccggcgatcggatcccgccttgcatcaactgaatcggag 124
Query: 128 tccgacgtgaaa 139
|||| ||||||
Sbjct: 125 gccgaggtgaaa 136
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 107 bits (54), Expect = 4e-23
Identities = 94/106 (88%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggtttt-catgg 77
|||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| | | |
Sbjct: 16 gattcgcttggtgcaggtcgggaactaatttgctgacacggccacgtgagttttcctttg 75
Query: 78 ttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
|||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 76 ttggtttgtgagcagggattggatcccgccttgcatcaactgaatc 121
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 93.7 bits (47), Expect = 6e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
|||||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64
Query: 68 gttttcatggttggctcgtgagc 90
|| |||||||||| | ||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 91.7 bits (46), Expect = 2e-18
Identities = 92/106 (86%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggct-gacacagccacgtgggttttcatgg 77
|||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctggttacagccacgtggcgtttcttta 75
Query: 78 ttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
|||| | |||||||| ||| ||||||||||||| ||||| ||||||
Sbjct: 76 ttggtttgtgagcagtgattggatcccgccttgcatcaactgaatc 121
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 91.7 bits (46), Expect = 2e-18
Identities = 92/106 (86%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggtt-ttcatgg 77
|||||||||||||||||||||||||| ||||||||||||||||||||| || || |
Sbjct: 16 gattcgcttggtgcaggtcgggaactaattggctgacacagccacgtgacttaatcctca 75
Query: 78 ttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
|||||| |||| |||| || ||||||||||||| ||||| ||||||
Sbjct: 76 ttggcttgtgaccaggaattggatcccgccttgcatcaactgaatc 121
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 87.7 bits (44), Expect = 4e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
|||||| |||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactgattggctaataccaccacgtgt 64
Query: 68 gttttcatggttggct 83
|| ||||||||||||
Sbjct: 65 cttgtcatggttggct 80
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 79.8 bits (40), Expect = 9e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 64 gtgggttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
|||| |||||| |||||||| ||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 7 gtggattttcacggttggcttgtgagcagggatcggatcctgccttccatcaactgaatc 66
Query: 124 cgagtccgacgtgaaa 139
|||| |||| ||||||
Sbjct: 67 cgagcccgaggtgaaa 82
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 79.8 bits (40), Expect = 9e-15
Identities = 95/112 (84%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggttttcatggt 78
||||||||||||||||||||||||| |||| |||||||| ||||| ||||| | |
Sbjct: 16 gattcgcttggtgcaggtcgggaaccaattgtctgacacatccacg-aagttttacttgc 74
Query: 79 tggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgagtcc 130
||| | |||||||||||| ||||||||||||| ||||| |||||| ||||||
Sbjct: 75 tggtttgtgagcagggattggatcccgccttgcatcaaatgaatcggagtcc 126
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 77.8 bits (39), Expect = 4e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgattggctga 54
|||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctcagattcgcttggtgcaggtcgggaactgattggctga 51
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 77.8 bits (39), Expect = 4e-14
Identities = 92/107 (85%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggtt-ttcatgg 77
||||||||||||||||||||||||| | ||||||||||||||||||| || | | | |
Sbjct: 16 gattcgcttggtgcaggtcgggaaccaactggctgacacagccacgtgacttgtaccttg 75
Query: 78 ttggctcgtgag-cagggatcggatcccgccttgtatcaagtgaatc 123
|||| | ||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct: 76 ttggtttgtgagccagggattggatcccgccttgcatcaactgaatc 122
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 73.8 bits (37), Expect = 6e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgac 55
|||||||||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctgac 52
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 73.8 bits (37), Expect = 6e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgatt 48
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctgattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 73.8 bits (37), Expect = 6e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgattggct 52
|||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 89/105 (84%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggttttcatggt 78
|||||||||||||||||||||| ||| || ||||||||||||||||| |||| | |
Sbjct: 16 gattcgcttggtgcaggtcggg-actaatccgctgacacagccacgtgtcttttacttat 74
Query: 79 tggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
||| | |||||||||||| || |||||||||| ||||| ||||||
Sbjct: 75 tgg-ttgtgagcagggattggctcccgccttgcatcaactgaatc 118
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 65.9 bits (33), Expect = 1e-10
Identities = 92/110 (83%), Gaps = 5/110 (4%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 73
||||||||||||||||||||||||| ||| ||||||||||||| |||| |||| |
Sbjct: 16 gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 75
Query: 74 atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
| |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 76 tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 125
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 8 cggcggcctctgattcgcttggtgcaggtcgggaactgatt 48
|||||| |||| |||||||||||||||||||||||||||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgatt 48
||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaactgatt 48
||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 99 gatcccgccttgtatcaagtgaatccgagtccga 132
|||||||||||| ||||| |||||||||| ||||
Sbjct: 69 gatcccgccttgcatcaactgaatccgagcccga 102
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 cctctgattcgcttggtgcaggtcgggaac 43
||||||||||||||||||||||||||||||
Sbjct: 11 cctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 gcggcctctgattcgcttggtgcaggtcgggaac 43
|||| |||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 gattcgcttggtgcaggtcgggaac 43
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 ctctgattcgcttggtgcaggtcgggaac 43
|||| ||||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcgggaac 40
