miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score =  121 bits (61), Expect = 3e-27
 Identities = 94/105 (89%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggttttcatggt 78
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||  |
Sbjct: 16  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtggattcccatcat 75

                                                        
Query: 79  tggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
           ||||  ||||||||||||| | |||||||||| ||||| ||||||
Sbjct: 76  tggcatgtgagcagggatctgctcccgccttgcatcaactgaatc 120




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score =  119 bits (60), Expect = 1e-26
 Identities = 114/132 (86%)
 Strand = Plus / Plus

                                                                       
Query: 8   cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
           |||||| ||| ||||||||||||||||||||||||||||||| ||| ||| |||||||| 
Sbjct: 5   cggcggtctcggattcgcttggtgcaggtcgggaactgattgactgtcaccgccacgtgt 64

                                                                       
Query: 68  gttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgag 127
            || ||||| |||||| |||| | | ||||||||||||||||| ||||| |||||| |||
Sbjct: 65  tttctcatgattggcttgtgaccggcgatcggatcccgccttgcatcaactgaatcggag 124

                       
Query: 128 tccgacgtgaaa 139
            |||| ||||||
Sbjct: 125 gccgaggtgaaa 136




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score =  107 bits (54), Expect = 4e-23
 Identities = 94/106 (88%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggtttt-catgg 77
           |||||||||||||||||||||||||| ||| |||||||| |||||||| ||||| | | |
Sbjct: 16  gattcgcttggtgcaggtcgggaactaatttgctgacacggccacgtgagttttcctttg 75

                                                         
Query: 78  ttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
           |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 76  ttggtttgtgagcagggattggatcccgccttgcatcaactgaatc 121




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 93.7 bits (47), Expect = 6e-19
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                      
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
          |||||| ||| ||||||||||||||||||||||||||||||||||||||| | |||||| 
Sbjct: 5  cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64

                                 
Query: 68 gttttcatggttggctcgtgagc 90
           || |||||||||| | ||||||
Sbjct: 65 cttgtcatggttggtttgtgagc 87




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggct-gacacagccacgtgggttttcatgg 77
           |||||||||||||||||||||||||||||||||| |  ||||||||||||  |||| |  
Sbjct: 16  gattcgcttggtgcaggtcgggaactgattggctggttacagccacgtggcgtttcttta 75

                                                         
Query: 78  ttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
           |||| | |||||||| ||| ||||||||||||| ||||| ||||||
Sbjct: 76  ttggtttgtgagcagtgattggatcccgccttgcatcaactgaatc 121




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 92/106 (86%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggtt-ttcatgg 77
           |||||||||||||||||||||||||| |||||||||||||||||||||  ||  || |  
Sbjct: 16  gattcgcttggtgcaggtcgggaactaattggctgacacagccacgtgacttaatcctca 75

                                                         
Query: 78  ttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
           |||||| |||| |||| || ||||||||||||| ||||| ||||||
Sbjct: 76  ttggcttgtgaccaggaattggatcccgccttgcatcaactgaatc 121




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 87.7 bits (44), Expect = 4e-17
 Identities = 68/76 (89%)
 Strand = Plus / Plus

                                                                      
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgg 67
          |||||| |||||||||||||||||||||||||||||||||||||| | ||  ||||||| 
Sbjct: 5  cggcggtctctgattcgcttggtgcaggtcgggaactgattggctaataccaccacgtgt 64

                          
Query: 68 gttttcatggttggct 83
           || ||||||||||||
Sbjct: 65 cttgtcatggttggct 80




>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
          Length = 82

 Score = 79.8 bits (40), Expect = 9e-15
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                       
Query: 64  gtgggttttcatggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
           |||| |||||| |||||||| ||||||||||||||||||| |||||  ||||| ||||||
Sbjct: 7   gtggattttcacggttggcttgtgagcagggatcggatcctgccttccatcaactgaatc 66

                           
Query: 124 cgagtccgacgtgaaa 139
           |||| |||| ||||||
Sbjct: 67  cgagcccgaggtgaaa 82




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
           pekinensis
          Length = 137

 Score = 79.8 bits (40), Expect = 9e-15
 Identities = 95/112 (84%), Gaps = 1/112 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggttttcatggt 78
           |||||||||||||||||||||||||  |||| |||||||| |||||   |||||  | | 
Sbjct: 16  gattcgcttggtgcaggtcgggaaccaattgtctgacacatccacg-aagttttacttgc 74

                                                               
Query: 79  tggctcgtgagcagggatcggatcccgccttgtatcaagtgaatccgagtcc 130
           ||| | |||||||||||| ||||||||||||| ||||| |||||| ||||||
Sbjct: 75  tggtttgtgagcagggattggatcccgccttgcatcaaatgaatcggagtcc 126




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                         
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgattggctga 54
          |||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 5  cggcggtctcagattcgcttggtgcaggtcgggaactgattggctga 51




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 92/107 (85%), Gaps = 2/107 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggtt-ttcatgg 77
           |||||||||||||||||||||||||  | |||||||||||||||||||  || | | | |
Sbjct: 16  gattcgcttggtgcaggtcgggaaccaactggctgacacagccacgtgacttgtaccttg 75

                                                          
Query: 78  ttggctcgtgag-cagggatcggatcccgccttgtatcaagtgaatc 123
           |||| | ||||| ||||||| ||||||||||||| ||||| ||||||
Sbjct: 76  ttggtttgtgagccagggattggatcccgccttgcatcaactgaatc 122




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                               
Query: 19 gattcgcttggtgcaggtcgggaactgattggctgac 55
          |||||||||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctgac 52




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                   
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgatt 48
          |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5  cggcggtctctgattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 73.8 bits (37), Expect = 6e-13
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                       
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgattggct 52
          |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 5  cggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 89/105 (84%), Gaps = 2/105 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgattggctgacacagccacgtgggttttcatggt 78
           |||||||||||||||||||||| ||| ||  |||||||||||||||||  ||||  |  |
Sbjct: 16  gattcgcttggtgcaggtcggg-actaatccgctgacacagccacgtgtcttttacttat 74

                                                        
Query: 79  tggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
           ||| | |||||||||||| || |||||||||| ||||| ||||||
Sbjct: 75  tgg-ttgtgagcagggattggctcccgccttgcatcaactgaatc 118




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 92/110 (83%), Gaps = 5/110 (4%)
 Strand = Plus / Plus

                                                                       
Query: 19  gattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgggtttt----c 73
           |||||||||||||||||||||||||  ||| ||||||||||||| ||||  ||||    |
Sbjct: 16  gattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaacc 75

                                                             
Query: 74  atggttggctcgtgagcagggatcggatcccgccttgtatcaagtgaatc 123
            |  |||| | |||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 76  tttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 125




>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
          trichocarpa
          Length = 155

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 8  cggcggcctctgattcgcttggtgcaggtcgggaactgatt 48
          |||||| |||| |||||||||||||||||||||||||||||
Sbjct: 5  cggcggtctctaattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 19 gattcgcttggtgcaggtcgggaactgatt 48
          ||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 19 gattcgcttggtgcaggtcgggaactgatt 48
          ||||||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgatt 45



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 99  gatcccgccttgtatcaagtgaatccgagtccga 132
           |||||||||||| ||||| |||||||||| ||||
Sbjct: 69  gatcccgccttgcatcaactgaatccgagcccga 102




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 14 cctctgattcgcttggtgcaggtcgggaac 43
          ||||||||||||||||||||||||||||||
Sbjct: 11 cctctgattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
          (barrel medic)
          Length = 121

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 10 gcggcctctgattcgcttggtgcaggtcgggaac 43
          |||| |||| ||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 19 gattcgcttggtgcaggtcgggaac 43
          |||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 ctctgattcgcttggtgcaggtcgggaac 43
          |||| ||||||||||||||||||||||||
Sbjct: 12 ctctaattcgcttggtgcaggtcgggaac 40