miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 206 bits (104), Expect = 7e-53
Identities = 132/139 (94%), Gaps = 3/139 (2%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcgggactaattcgctgacacagccacg 73
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggactaatccgctgacacagccacg 60
Query: 74 tggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactgaat 133
|| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 61 tg--tcttttacttattgg-ttgtgagcagggattggctcccgccttgcatcaactgaat 117
Query: 134 cggagctcccacggtgaaa 152
||||||||||| |||||||
Sbjct: 118 cggagctcccatggtgaaa 136
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 157 bits (79), Expect = 6e-38
Identities = 117/127 (92%), Gaps = 2/127 (1%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaattcgctgacacagccac 72
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactaatttgctgacacggccac 60
Query: 73 gtggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactgaa 132
||| | || | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgagttttcct-ttgttggtttgtgagcagggattggatcccgccttgcatcaactgaa 119
Query: 133 tcggagc 139
|||||||
Sbjct: 120 tcggagc 126
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 143 bits (72), Expect = 8e-34
Identities = 117/128 (91%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaattcgctgacacagccac 72
|||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccac 60
Query: 73 gtggctctttttcttattggtttgtgagc-agggattggatcccgccttgcatcaactga 131
||| || | | ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 gtgact-tgtaccttgttggtttgtgagccagggattggatcccgccttgcatcaactga 119
Query: 132 atcggagc 139
||||||||
Sbjct: 120 atcggagc 127
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 139 bits (70), Expect = 1e-32
Identities = 126/141 (89%), Gaps = 4/141 (2%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaattcgctgac-acagcca 71
|||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactgattggctggttacagcca 60
Query: 72 cgtggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactga 131
|||||| || || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 61 cgtggcgtttctt--tattggtttgtgagcagtgattggatcccgccttgcatcaactga 118
Query: 132 atcggagctcccacggtgaaa 152
|||||||| || | |||||||
Sbjct: 119 atcggagccccgatggtgaaa 139
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 137 bits (69), Expect = 5e-32
Identities = 116/128 (90%), Gaps = 4/128 (3%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaattcg-ctgacacagcca 71
||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||
Sbjct: 1 tcaccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcct 60
Query: 72 cgtggctctttttc--ttattggtttgtgagcagggattggatcccgccttgcatcaact 129
|||| || || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaact 120
Query: 130 gaatcgga 137
||||||||
Sbjct: 121 gaatcgga 128
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 129 bits (65), Expect = 1e-29
Identities = 112/125 (89%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggg-actaattcgctgacacagccac 72
||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1 tcaccgtcgagatcggattcgcttggtgcaggtcgggaactaattggctgacacagccac 60
Query: 73 gtggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactgaa 132
||| || | | || ||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct: 61 gtgact-taatcctcattggcttgtgaccaggaattggatcccgccttgcatcaactgaa 119
Query: 133 tcgga 137
|||||
Sbjct: 120 tcgga 124
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 111 bits (56), Expect = 3e-24
Identities = 110/126 (87%), Gaps = 4/126 (3%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga-ctaattcgctgacacagccac 72
|||||||| |||||||||||||||||||||||||||| | |||| |||||||| ||||
Sbjct: 1 tcaccgtcttgctcggattcgcttggtgcaggtcgggaaccaattgtctgacacatccac 60
Query: 73 gtggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactgaa 132
| | |||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 61 gaag---ttttacttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaa 117
Query: 133 tcggag 138
||||||
Sbjct: 118 tcggag 123
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 103 bits (52), Expect = 7e-22
Identities = 110/127 (86%), Gaps = 3/127 (2%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggg-actaattcgctgacacagccac 72
|||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 1 tcacggtcgggctcggattcgcttggtgcaggtcgggaactgattggctgacacagccac 60
Query: 73 gtggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactgaa 132
|||| || | ||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 61 gtgg--attcccatcattggcatgtgagcagggatctgctcccgccttgcatcaactgaa 118
Query: 133 tcggagc 139
|||||||
Sbjct: 119 tcggagc 125
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 73.8 bits (37), Expect = 6e-13
Identities = 104/124 (83%), Gaps = 3/124 (2%)
Strand = Plus / Plus
Query: 16 accgtcgggctcggattcgcttggtgcaggtcggga-ctaattcgctgacacagccacgt 74
|||| ||| ||||||||||||||||||||||||||| || ||| ||| ||| |||||||
Sbjct: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattgactgtcaccgccacgt 62
Query: 75 ggctctttttcttattggtttgtgagcagggattggatcccgccttgcatcaactgaatc 134
| | || | | ||||| |||||| | | ||| ||||||||||||||||||||||||||
Sbjct: 63 g--ttttctcatgattggcttgtgaccggcgatcggatcccgccttgcatcaactgaatc 120
Query: 135 ggag 138
||||
Sbjct: 121 ggag 124
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 104 ggattggatcccgccttgcatcaactgaatcggagc 139
||||||||||||||||||||||||||||||||||||
Sbjct: 89 ggattggatcccgccttgcatcaactgaatcggagc 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga 51
|||| |||||||||||||||||||||||||||||||||
Sbjct: 1 tcacggtcgggctcggattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 14 tcaccgtcgggctcggattcgcttggtgcaggtcggga 51
||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tcaccgtcgagctcggattcgcttggtgcaggtcggga 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 112 tcccgccttgcatcaactgaatcgga 137
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 106 attggatcccgccttgcatcaactgaatcggag 138
|||||||||||||||||||||||||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 106 attggatcccgccttgcatcaactgaatcggag 138
|||||||||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcggag 167
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 accgtcgggctcggattcgcttggtgcaggtcggga 51
|||| ||| ||| |||||||||||||||||||||||
Sbjct: 3 accggcggtctctgattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 106 attggatcccgccttgcatcaactgaatcggag 138
|||||||||||||||||||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcggag 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 attcgcttggtgcaggtcggga 51
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 106 attggatcccgccttgcatcaactgaatcggag 138
|||||||||||||||||||||||||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcggag 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 attcgcttggtgcaggtcggga 51
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 89 ttggtttgtgagcagggattggatcccgccttgcatcaactgaatcggagc 139
|||| |||||||||||||| |||||| ||||| ||||||||||||| ||||
Sbjct: 21 ttggcttgtgagcagggatcggatcctgccttccatcaactgaatccgagc 71
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 106 attggatcccgccttgcatcaactgaatcg 135
||||||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 attcgcttggtgcaggtcggga 51
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 58.0 bits (29), Expect = 4e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 16 accgtcgggctcggattcgcttggtgcaggtcggg-actaattcgctgacacagccacgt 74
|||| ||| |||||||||||||||||||||||||| ||| ||| |||||||| | |||||
Sbjct: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgt 62
Query: 75 g 75
|
Sbjct: 63 g 63
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 110 gatcccgccttgcatcaactgaatcggag 138
|||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggag 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 attcgcttggtgcaggtcggga 51
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 26 tcggattcgcttggtgcaggtcggga 51
||||||||||||||||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcggga 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 gccttgcatcaactgaatcggag 138
|||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggag 114
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 110 gatcccgccttgcatcaactgaatcggagc 139
||||||||||||||||||||||||| ||||
Sbjct: 69 gatcccgccttgcatcaactgaatccgagc 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 gattcgcttggtgcaggtcggga 51
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 accgtcgggctcggattcgcttggtgcaggtcggga 51
|||| ||| ||| |||||||||||||||||||||||
Sbjct: 3 accggcggtctcagattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 accgtcgggctcggattcgcttggtgcaggtcggga 51
|||| ||| ||| |||||||||||||||||||||||
Sbjct: 3 accggcggtctctgattcgcttggtgcaggtcggga 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tcccgccttgcatcaactgaatc 134
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 gattcgcttggtgcaggtcggga 51
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ggatcccgccttgcatcaactgaatcggagc 139
||||||||||||||| ||| |||||||||||
Sbjct: 61 ggatcccgccttgcaccaagtgaatcggagc 91
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 109 ggatcccgccttgcatcaactgaatcggagc 139
||||||||||||||| ||| |||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggagc 93
