miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 12 agtcctctttgatattggcctggttcattcagatcttcc 50
||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 agtcctctttgatattggcctggttcactcagatcttcc 39
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 71 tctcttagatatctgattgagccgcgtcaatatctcagtgctctct 116
||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 64 tctctcagttatctgattgagccgcgccaatatctcagtgctctct 109
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatctcagtgctctct 116
||||||||||||||||| |||||||||||| ||||||
Sbjct: 78 tatctgattgagccgcgccaatatctcagtactctct 114
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcattcagatctt 48
||||||||||||||||||||| |||||||||
Sbjct: 7 ctttgatattggcctggttcactcagatctt 37
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 81 atctgattgagccgcgtcaatatctcagtgctctct 116
|||||||||||||| |||||||||||||| ||||||
Sbjct: 51 atctgattgagccgtgtcaatatctcagtcctctct 86
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 82 tctgattgagccgcgtcaatatctc 106
|||||||||||||||||||||||||
Sbjct: 70 tctgattgagccgcgtcaatatctc 94
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctc 106
|||||||||||||||||||||||
Sbjct: 73 tgattgagccgcgtcaatatctc 95
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcattcaga 44
||||||||||||||||||||| |||||
Sbjct: 7 ctttgatattggcctggttcactcaga 33
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatctc 106
|||||||||||||||||||||||
Sbjct: 71 tgattgagccgcgtcaatatctc 93
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa Japonica
Group
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 80 tatctgattgagccgcgtcaatatctc 106
||||||||||||||||| |||||||||
Sbjct: 64 tatctgattgagccgcgccaatatctc 90
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatct 105
||||||||||||||||||||||
Sbjct: 74 tgattgagccgcgtcaatatct 95
>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 tgattgagccgcgtcaatatct 105
||||||||||||||||||||||
Sbjct: 72 tgattgagccgcgtcaatatct 93
>RF00643;MIR171_1;EU950482.1/151-254 4577:Zea mays
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gattgagccgcgtcaatatctc 106
||||||||||||||||||||||
Sbjct: 73 gattgagccgcgtcaatatctc 94
>RF00643;MIR171_1;ABXC01000173.1/152883-152783 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gattgagccgcgtcaatatctc 106
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgtcaatatctc 91
>RF00643;MIR171_1;AC147962.1/85803-85682 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gattgagccgcgtcaatatctc 106
||||||||||||||||||||||
Sbjct: 91 gattgagccgcgtcaatatctc 112
