miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 81.8 bits (41), Expect = 3e-15
Identities = 103/122 (84%), Gaps = 5/122 (4%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttgatgcaggtcggaactgattggctgacacaatcacataggtg 81
||||||||||||||||||| |||||||||| ||| || ||||||||| ||| |||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggactaatccgctgacacagccac----gtg 62
Query: 82 cttttgccttattggtttgtaagtagggattggctcccgccttacatcaactgaatcgga 141
||| |||||||||| || || ||||||||||||||||||| ||||||||||||||||
Sbjct: 63 tcttttacttattggtt-gtgagcagggattggctcccgccttgcatcaactgaatcgga 121
Query: 142 gc 143
||
Sbjct: 122 gc 123
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 77.8 bits (39), Expect = 4e-14
Identities = 105/125 (84%), Gaps = 4/125 (3%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttgatgcaggtcgg-aactgattggctgacacaatcacataggt 80
||||||||||||||||||| |||||||||| |||| ||| |||||||| ||| | ||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaactaatttgctgacacggccacgtgagt 66
Query: 81 gcttttgccttattggtttgtaagtagggattggctcccgccttacatcaactgaatcgg 140
||| | || ||||||||| || ||||||||| ||||||||| |||||||||||||||
Sbjct: 67 ---tttcctttgttggtttgtgagcagggattggatcccgccttgcatcaactgaatcgg 123
Query: 141 agcct 145
|||||
Sbjct: 124 agcct 128
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 73.8 bits (37), Expect = 7e-13
Identities = 47/49 (95%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttgatgcaggtc-ggaactgattggctgacaca 69
||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaactgattggctgacaca 55
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 71.9 bits (36), Expect = 3e-12
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 90 ttattggtttgtaagtagggattggctcccgccttacatcaactgaatcgga 141
|||||||||||| || ||||||||| ||||||||| ||||||||||||||||
Sbjct: 77 ttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 128
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 21 atcgggctcggattcgcttgatgcaggtcgg 51
|||||||||||||||||||| ||||||||||
Sbjct: 6 atcgggctcggattcgcttggtgcaggtcgg 36
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 90 ttattggtttgtaagtagggattggctcccgccttacatcaactgaatcggagcc 144
|||||||||||| || || |||||| ||||||||| |||||||||||||||||||
Sbjct: 73 ttattggtttgtgagcagtgattggatcccgccttgcatcaactgaatcggagcc 127
Score = 63.9 bits (32), Expect = 7e-10
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttgatgcaggtc-ggaactgattggctg 64
||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaactgattggctg 50
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 65.9 bits (33), Expect = 2e-10
Identities = 106/126 (84%), Gaps = 7/126 (5%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttgatgcaggtcgg-aactgattggctgacacaatcacataggt 80
||||||||||||||||||| |||||||||| ||| | ||||||||||| ||| ||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccac----gt 62
Query: 81 g-cttttgccttattggtttgtaagt-agggattggctcccgccttacatcaactgaatc 138
| ||| | |||| ||||||||| || ||||||||| ||||||||| |||||||||||||
Sbjct: 63 gacttgtaccttgttggtttgtgagccagggattggatcccgccttgcatcaactgaatc 122
Query: 139 ggagcc 144
||||||
Sbjct: 123 ggagcc 128
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 61.9 bits (31), Expect = 3e-09
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 27 ctcggattcgcttgatgcaggtc-ggaactgattggctgacac 68
|||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattggctgacac 54
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 108 ggattggctcccgccttacatcaactgaatcggagcc 144
||||||| ||||||||| |||||||||||||||||||
Sbjct: 89 ggattggatcccgccttgcatcaactgaatcggagcc 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 22 tcgggctcggattcgcttgatgcaggtcgg 51
||||||||||||||||||| ||||||||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgg 36
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 56.0 bits (28), Expect = 2e-07
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 28 tcggattcgcttgatgcaggtc-ggaactgattggctgac 66
||||||||||||| |||||||| |||||||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactgattggctgac 52
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 54.0 bits (27), Expect = 6e-07
Identities = 40/43 (93%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 28 tcggattcgcttgatgcaggtc-ggaactgattggctgacaca 69
||||||||||||| |||||||| |||||| |||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaattggctgacaca 55
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 110 attggctcccgccttacatcaactgaatcgga 141
||||| ||||||||| ||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 110 attggctcccgccttacatcaactgaatcggag 142
||||| ||||||||| |||||||||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 110 attggctcccgccttacatcaactgaatcggag 142
||||| ||||||||| |||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 110 attggctcccgccttacatcaactgaatcggag 142
||||| ||||||||| |||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 110 attggctcccgccttacatcaactgaatcggag 142
||||| ||||||||| |||||||||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcggag 109
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Plus
Query: 31 gattcgcttgatgcaggtcgg-aactgattggctga 65
|||||||||| |||||||||| ||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctga 51
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 27 ctcggattcgcttgatgcaggtc-ggaactgattg 60
|||||||||||||| |||||||| |||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattg 46
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 tcccgccttacatcaactgaatcggag 142
||||||||| |||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 26 gctcggattcgcttgatgcaggtc-ggaactgatt 59
||||||||||||||| |||||||| ||||||||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 116 tcccgccttacatcaactgaatcggag 142
||||||||| |||||||||||||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 44.1 bits (22), Expect = 6e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 31 gattcgcttgatgcaggtcgg-aactgattggct 63
|||||||||| |||||||||| ||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 26 gctcggattcgcttgatgcaggtcgg 51
||||||||||||||| ||||||||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgg 36
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 attggctcccgccttacatcaactgaatcg 139
||||| ||||||||| ||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
