miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00943;MIR824;AC189548.2/18653-19283 51351:Brassica rapa subsp.
pekinensis
Length = 631
Score = 75.8 bits (38), Expect = 5e-13
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 355 ggagtgggggaggtgctggattatttc-cccttctcatcgatggtctagatttgcgaggt 413
||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 558 ggagtggggaaggtgctgggttattagtcccttctcatcgatggtctagatgtgcgaggt 617
Query: 414 gactct 419
||||||
Sbjct: 618 gactct 623
Score = 65.9 bits (33), Expect = 4e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 11 ctcgagttgtctctcatatctagaccatttgtgagaaggggtttt 55
|||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct: 1 ctcgagttgtctttcatgtctagaccatttgtgagaagggatttt 45
>RF00943;MIR824;FM164204.1/27-664 3702:Arabidopsis thaliana (thale
cress)
Length = 638
Score = 67.9 bits (34), Expect = 1e-10
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 382 cccttctcatcgatggtctagatttgcgaggtgactct 419
||||||||||||||||||||||| ||||||||||||||
Sbjct: 593 cccttctcatcgatggtctagatgtgcgaggtgactct 630
Score = 65.9 bits (33), Expect = 4e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 14 gagttgtctctcatatctagaccatttgtgagaaggg 50
|||||||||||||| ||||||||||||||||||||||
Sbjct: 4 gagttgtctctcatgtctagaccatttgtgagaaggg 40
>RF00943;MIR824;FM164206.1/41-590 3702:Arabidopsis thaliana (thale
cress)
Length = 550
Score = 67.9 bits (34), Expect = 1e-10
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 382 cccttctcatcgatggtctagatttgcgaggtgactct 419
||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 cccttctcatcgatggtctagatgtgcgaggtgactct 542
Score = 65.9 bits (33), Expect = 4e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 14 gagttgtctctcatatctagaccatttgtgagaaggg 50
|||||||||||||| ||||||||||||||||||||||
Sbjct: 4 gagttgtctctcatgtctagaccatttgtgagaaggg 40
