miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 252 bits (127), Expect = 2e-66
Identities = 181/198 (91%), Gaps = 2/198 (1%)
Strand = Plus / Plus
Query: 6 tggaagtagggctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaa 65
||||||||| |||||||| ||||||||| ||||| ||| ||||||||||||||||||||
Sbjct: 5 tggaagtagagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaa 64
Query: 66 gctatggataccataagccctaatccttgtattg--aaaaaggacttggtaatatggctt 123
||||||||| ||||||||||||||||||||| | |||||||| ||||| |||||| ||
Sbjct: 65 gctatggatcccataagccctaatccttgtaaagtaaaaaaggatttggttatatggatt 124
Query: 124 gcatatctcaggagctttaacttaccctttaattgcttttacccttctttggattgaagg 183
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 125 gcatatctcaggagctttaacttgccctttaatggcttttactcttctttggattgaagg 184
Query: 184 gagctctacatcttcttt 201
||||||||||||||||||
Sbjct: 185 gagctctacatcttcttt 202
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 73.8 bits (37), Expect = 8e-13
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 125 catatctcaggagctttaacttaccc-tttaattgcttttacccttctttggattgaagg 183
||||||||||||||||| |||||||| |||||| |||| || |||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 184 gagctctacatct 196
||||||| |||||
Sbjct: 189 gagctcttcatct 201
Score = 65.9 bits (33), Expect = 2e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 16 gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 75
||||||| ||||||| ||| ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74
Query: 76 ccataagcc 84
|||||||||
Sbjct: 75 ccataagcc 83
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 166 ccttctttggattgaagggagctctacatct 196
|||| ||||||||||||||||||||||||||
Sbjct: 157 ccttgtttggattgaagggagctctacatct 187
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tggcttgcatatctcaggagctt 140
|||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 169 tctttggattgaagggagctctacatctt 197
|||||||||||||||||||||| ||||||
Sbjct: 153 tctttggattgaagggagctctgcatctt 181
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 169 tctttggattgaagggagctctacatctt 197
|||||||||||||||||||||| ||||||
Sbjct: 240 tctttggattgaagggagctctgcatctt 268
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 ccttctttggattgaagggagctctaca 193
|||| |||||||||||||||||||||||
Sbjct: 157 ccttgtttggattgaagggagctctaca 184
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 ggcttgcatatctcaggagcttta 142
||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 119 ggcttgcatatctcaggagcttta 142
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 171 tttggattgaagggagctctacat 194
||||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctacat 191
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 ccttctttggattgaagggagctctaca 193
|||| |||||||||||||||||||||||
Sbjct: 157 ccttgtttggattgaagggagctctaca 184
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 118 tggcttgcatatctcaggagct 139
||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 169 tctttggattgaagggagctctacatc 195
|||||||||||||||||||||| ||||
Sbjct: 199 tctttggattgaagggagctctgcatc 225
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 169 tctttggattgaagggagctctacatc 195
|||||||||||||||||||||| ||||
Sbjct: 210 tctttggattgaagggagctctgcatc 236
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 172 ttggattgaagggagctctaca 193
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
