miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AASC02037889.1/19-115 6500:Aplysia californica
(California sea hare)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatca 55
||||||||||||||||||||||||
Sbjct: 48 tcatcgtcatcatcatcgtcatca 25
>RF01059;mir-598;AASC02039166.1/5776-5863 6500:Aplysia californica
(California sea hare)
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatca 55
||||||||||||||||||||||||
Sbjct: 33 tcatcgtcatcatcatcgtcatca 10
>RF01059;mir-598;AASC02042577.1/5304-5401 6500:Aplysia californica
(California sea hare)
Length = 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 31 gtcatcgtcatcatcatcgtcatcacca 58
|||||||||||||||||| |||||||||
Sbjct: 37 gtcatcgtcatcatcatcatcatcacca 10
>RF01059;mir-598;AAPU01010710.1/212028-212121 7230:Drosophila
mojavensis
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatca 55
||||||||||||||||||||||||
Sbjct: 27 tcatcgtcatcatcatcgtcatca 4
>RF01059;mir-598;AASC02056842.1/2079-1955 6500:Aplysia californica
(California sea hare)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatcacca 58
||||||||||||||||| |||||||||
Sbjct: 36 tcatcgtcatcatcatcatcatcacca 10
>RF01059;mir-598;AAGJ02029244.1/3241-3325 7668:Strongylocentrotus
purpuratus
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatcacca 58
||||| |||||||||||||||||||||
Sbjct: 30 tcatcatcatcatcatcgtcatcacca 4
>RF01059;mir-598;AAGJ02158258.1/814-898 7668:Strongylocentrotus
purpuratus
Length = 85
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatcacca 58
||||| |||||||||||||||||||||
Sbjct: 30 tcatcatcatcatcatcgtcatcacca 4
>RF01059;mir-598;AAGJ02130784.1/524-617 7668:Strongylocentrotus
purpuratus
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatcacca 58
||||| |||||||||||||||||||||
Sbjct: 48 tcatcatcatcatcatcgtcatcacca 22
>RF01059;mir-598;AAGJ02002862.1/1713-1617 7668:Strongylocentrotus
purpuratus
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatcacca 58
||||| |||||||||||||||||||||
Sbjct: 30 tcatcatcatcatcatcgtcatcacca 4
>RF01059;mir-598;AAGF03000556.2/15150-15203 312017:Tetrahymena
thermophila SB210
Length = 54
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 32 tcatcgtcatcatcatcgtcatcacca 58
||||| |||||||||||||||||||||
Sbjct: 30 tcatcatcatcatcatcgtcatcacca 4
>RF01059;mir-598;AACY020757299.1/526-403 408172:marine metagenome
Length = 124
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 33 catcgtcatcatcatcgtcatc 54
||||||||||||||||||||||
Sbjct: 90 catcgtcatcatcatcgtcatc 111
