miRNEST 2.0, an integrative microRNA resource :: BLAST
>48423_cpa-miR162a:pmrd
Length = 109
Score = 75.8 bits (38), Expect = 7e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 3 aaagtcactggaggcagcggttcatcgatctcttcctg 40
||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aaagtcactggaggcagcggttcatcgatctcttcctg 43
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gatcgataaacctctgcatccagcg 121
|||||||||||||||||||||||||
Sbjct: 78 gatcgataaacctctgcatccagcg 102
>48493_ghr-miR162a:pmrd
Length = 148
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 3 aaagtcactggaggcagcggttcatcgatctcttcctg 40
|||| |||||||||||||||||||||||||||||||||
Sbjct: 17 aaagacactggaggcagcggttcatcgatctcttcctg 54
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gatcgataaacctctgcatccagcg 121
|||||||||||||||||||||||||
Sbjct: 92 gatcgataaacctctgcatccagcg 116
>46937_ath-miR162a:pmrd
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 5 agtcactggaggcagcggttcatcgatctcttcctgtg 42
|||| |||||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctgtg 57
Score = 65.9 bits (33), Expect = 7e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 83 taaaagcacgaacagatcgataaacctctgcatccagcggttgcc 127
|||||||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 73 taaaagcatgaatagatcgataaacctctgcatccagcgtttgcc 117
>54784_vvi-miR162:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 aagtcactggaggcagcggttcatcgatctcttcctg 40
||||||||||| |||||||||||||||||||||||||
Sbjct: 3 aagtcactggatgcagcggttcatcgatctcttcctg 39
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccagcg 121
|||||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccagcg 95
>54387_rco-miR162:pmrd
Length = 96
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 97 gatcgataaacctctgcatccagc 120
||||||||||||||||||||||||
Sbjct: 73 gatcgataaacctctgcatccagc 96
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||||||||||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctg 65
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 92 gaacagatcgataaacctctgcatccagcg 121
|||| |||||||||||||||||||||||||
Sbjct: 35 gaaccgatcgataaacctctgcatccagcg 6
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||||||||||
Sbjct: 97 cactggaggcagcggttcatcgatctcttcctg 65
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 92 gaacagatcgataaacctctgcatccagcg 121
|||| |||||||||||||||||||||||||
Sbjct: 35 gaaccgatcgataaacctctgcatccagcg 6
>51616_ptc-miR162a:pmrd
Length = 107
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||||||||||
Sbjct: 9 cactggaggcagcggttcatcgatctcttcctg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 92 gaacagatcgataaacctctgcatccagcg 121
|||| |||||||||||||||||||||||||
Sbjct: 71 gaaccgatcgataaacctctgcatccagcg 100
>48545_gma-miR162a:pmrd
Length = 102
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 4 aagtcactggaggcagcggttcatcgatctcttcctg 40
||||||||||| |||||||||||||||||||||||||
Sbjct: 4 aagtcactggatgcagcggttcatcgatctcttcctg 40
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 97 gatcgataaacctctgcatccagcg 121
|||||||||||||||||||||||||
Sbjct: 71 gatcgataaacctctgcatccagcg 95
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||| ||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctg 64
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 89 cacgaacagatcgataaacctctgcatccag 119
||||||| |||||||||||||||||||||||
Sbjct: 37 cacgaaccgatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||| ||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctg 66
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 89 cacgaacagatcgataaacctctgcatccag 119
||||||| |||||||||||||||||||||||
Sbjct: 39 cacgaaccgatcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||| ||||||
Sbjct: 98 cactggaggcagcggttcatcgatcttttcctg 66
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 89 cacgaacagatcgataaacctctgcatccag 119
||||||| |||||||||||||||||||||||
Sbjct: 39 cacgaaccgatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||| ||||||
Sbjct: 96 cactggaggcagcggttcatcgatcttttcctg 64
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 89 cacgaacagatcgataaacctctgcatccag 119
||||||| |||||||||||||||||||||||
Sbjct: 37 cacgaaccgatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||| ||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctg 41
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 89 cacgaacagatcgataaacctctgcatccag 119
||||||| |||||||||||||||||||||||
Sbjct: 68 cacgaaccgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 cactggaggcagcggttcatcgatctcttcctg 40
|||||||||||||||||||||||||| ||||||
Sbjct: 9 cactggaggcagcggttcatcgatcttttcctg 41
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 89 cacgaacagatcgataaacctctgcatccag 119
||||||| |||||||||||||||||||||||
Sbjct: 68 cacgaaccgatcgataaacctctgcatccag 98
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 4 aagtcactggaggcagcggttcatcgatctcttcctgtg 42
||||| ||||||||||||||||||||||| ||||||||
Sbjct: 108 aagtcgctggaggcagcggttcatcgatcaattcctgtg 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 84 aaaagcacgaacagatcgataaacctctgcatccagcg 121
||||||| ||| |||||||||||||||||||||||||
Sbjct: 50 aaaagcaagaatcgatcgataaacctctgcatccagcg 13
>46938_ath-miR162b:pmrd
Length = 111
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 4 aagtcactggaggcagcggttcatcgatctcttcctgtg 42
||||| ||||||||||||||||||||||| ||||||||
Sbjct: 6 aagtcgctggaggcagcggttcatcgatcaattcctgtg 44
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 84 aaaagcacgaacagatcgataaacctctgcatccagcg 121
||||||| ||| |||||||||||||||||||||||||
Sbjct: 64 aaaagcaagaatcgatcgataaacctctgcatccagcg 101
>48834_osa-miR162a:pmrd
Length = 171
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 gatcgataaacctctgcatccag 119
|||||||||||||||||||||||
Sbjct: 141 gatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 ctggaggcagcggttcatcgatctcttcctg 40
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccag 119
|||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccag 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 92 gaacagatcgataaacctctgcatccag 119
|||||||||||| |||| ||||||||||
Sbjct: 28 gaacagatcgatgaaccgctgcatccag 1
>48706_mtr-miR162c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 10 ctggaggcagcggttcatcgatctcttcctg 40
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 99 tcgataaacctctgcatcca 118
||||||||||||||||||||
Sbjct: 20 tcgataaacctctgcatcca 1
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 92 gaacagatcgataaacctctgcatccag 119
|||||||||||| |||| ||||||||||
Sbjct: 59 gaacagatcgatgaaccgctgcatccag 86
>48685_lsa-miR162:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccagcg 121
|||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcg 23
>48682_llu-miR162:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 ctggaggcagcggttcatcgatctcttcctg 40
||||| ||||||||| |||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctg 31
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 gatcgataaacctctgcatccag 119
|||||||||||||||||||||||
Sbjct: 58 gatcgataaacctctgcatccag 80
>48546_gma-miR162m:pmrd
Length = 367
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccagcg 121
|||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcg 23
>48705_mtr-miR162b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tggaggcagcggttcatcgatctcttcctg 40
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatcca 118
||||||||||||||||||||
Sbjct: 66 tcgataaacctctgcatcca 85
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccag 119
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccag 119
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ctggaggcagcggttcatcgatct 33
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
