miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
          (papaya)
          Length = 91

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatctcttcctg 41
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 98  gatcgataaacctctgcatccagc 121
           ||||||||||||||||||||||||
Sbjct: 68  gatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
          (thale cress)
          Length = 88

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 11 ctggaggcagcggttcatcgatctcttcctgtg 43
          |||||||||||||||||||||||||||||||||
Sbjct: 3  ctggaggcagcggttcatcgatctcttcctgtg 35



 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                 
Query: 84  taaaagcacgaacagatcgataaacctctgcatccagc 121
           |||||||| ||| |||||||||||||||||||||||||
Sbjct: 51  taaaagcatgaatagatcgataaacctctgcatccagc 88




>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
          trichocarpa
          Length = 91

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatctcttcctg 41
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 93  gaacagatcgataaacctctgcatccagc 121
           |||| ||||||||||||||||||||||||
Sbjct: 63  gaaccgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
          (castor bean)
          Length = 96

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatctcttcctg 41
          |||||||||||||||||||||||||||||||||
Sbjct: 1  cactggaggcagcggttcatcgatctcttcctg 33



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 98  gatcgataaacctctgcatccagc 121
           ||||||||||||||||||||||||
Sbjct: 73  gatcgataaacctctgcatccagc 96




>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa subsp.
           pekinensis
          Length = 92

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 82  attaaaagcacgaacagatcgataaacctctgcatccagc 121
           |||||||||| |||||||||||||||||| ||||||||||
Sbjct: 53  attaaaagcatgaacagatcgataaacctgtgcatccagc 92



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 11 ctggaggcagcggttcatcgatctctt 37
          ||||||||||||||| |||||||||||
Sbjct: 3  ctggaggcagcggttgatcgatctctt 29




>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
          Length = 91

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatctcttcctg 41
          |||||||||||||||||||||||||| ||||||
Sbjct: 1  cactggaggcagcggttcatcgatcttttcctg 33



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 90  cacgaacagatcgataaacctctgcatccag 120
           ||||||| |||||||||||||||||||||||
Sbjct: 60  cacgaaccgatcgataaacctctgcatccag 90




>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
          Length = 88

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatctcttcctg 41
          ||||||| |||||||||||||||||||||||||
Sbjct: 1  cactggatgcagcggttcatcgatctcttcctg 33



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 100 tcgataaacctctgcatccagc 121
           ||||||||||||||||||||||
Sbjct: 67  tcgataaacctctgcatccagc 88




>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
          (thale cress)
          Length = 91

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 ctggaggcagcggttcatcgatctcttcctgtg 43
          |||||||||||||||||||||||  ||||||||
Sbjct: 3  ctggaggcagcggttcatcgatcaattcctgtg 35



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 85  aaaagcacgaacagatcgataaacctctgcatccagc 121
           ||||||| |||  ||||||||||||||||||||||||
Sbjct: 55  aaaagcaagaatcgatcgataaacctctgcatccagc 91




>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
          (barrel medic)
          Length = 90

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 9  cactggaggcagcggttcatcgatctcttcctg 41
          ||||||| |||||||||||||||||| ||||||
Sbjct: 1  cactggatgcagcggttcatcgatctgttcctg 33



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 100 tcgataaacctctgcatccagc 121
           ||||||||||||||||||||||
Sbjct: 69  tcgataaacctctgcatccagc 90




>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
           (sorghum)
          Length = 132

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 98  gatcgataaacctctgcatccagc 121
           ||||||||||||||||||||||||
Sbjct: 109 gatcgataaacctctgcatccagc 132




>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
           Group
          Length = 158

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 98  gatcgataaacctctgcatccag 120
           |||||||||||||||||||||||
Sbjct: 135 gatcgataaacctctgcatccag 157




>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
           Indica Group
          Length = 159

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 98  gatcgataaacctctgcatccag 120
           |||||||||||||||||||||||
Sbjct: 136 gatcgataaacctctgcatccag 158




>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
          Length = 133

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 100 tcgataaacctctgcatccagc 121
           ||||||||||||||||||||||
Sbjct: 112 tcgataaacctctgcatccagc 133