miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01059;mir-598;AAFR03043215.1/1072-1016 13616:Monodelphis
          domestica (gray short-tailed opossum)
          Length = 57

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 20 catcatcatcatcatcttcttc 41
          ||||||||||||||||||||||
Sbjct: 23 catcatcatcatcatcttcttc 2




>RF01059;mir-598;AAQQ01282491.1/3271-3329 43179:Spermophilus
          tridecemlineatus (thirteen-lined ground squirrel)
          Length = 59

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 20 catcatcatcatcatcttcttc 41
          ||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcttcttc 8




>RF01059;mir-598;AAHY01105911.1/400-306 10090:Mus musculus (house
          mouse)
          Length = 95

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 20 catcatcatcatcatcttcttc 41
          ||||||||||||||||||||||
Sbjct: 44 catcatcatcatcatcttcttc 23




>RF01059;mir-598;AAWZ01049713.1/1510-1420 28377:Anolis
          carolinensis (green anole)
          Length = 91

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 20 catcatcatcatcatcttcttc 41
          ||||||||||||||||||||||
Sbjct: 69 catcatcatcatcatcttcttc 90




>RF01059;mir-598;AAWZ01006914.1/74932-75009 28377:Anolis
          carolinensis (green anole)
          Length = 78

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 20 catcatcatcatcatcttcttc 41
          ||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcttcttc 8




>RF01059;mir-598;BX842696.13/67074-67012 7955:Danio rerio
          (zebrafish)
          Length = 63

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 20 catcatcatcatcatcttcttc 41
          ||||||||||||||||||||||
Sbjct: 29 catcatcatcatcatcttcttc 8