miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 89.7 bits (45), Expect = 8e-18
Identities = 105/120 (87%), Gaps = 5/120 (4%)
Strand = Plus / Plus
Query: 4 gggctcagattcgcttggtgcagttcgggactgattggctgacacaaccacataggtact 63
|||||| |||||||||||||||| |||||||| || ||||||||| |||| | || ||
Sbjct: 9 gggctcggattcgcttggtgcaggtcgggactaatccgctgacacagccacgt--gt-ct 65
Query: 64 tttgccttattggtttgtaagcatggattggctcccgccttgcatcaactgaatcggagc 123
||| | ||||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 tttac-ttattggtt-gtgagcagggattggctcccgccttgcatcaactgaatcggagc 123
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 83.8 bits (42), Expect = 5e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 73 ttggtttgtaagcatggattggctcccgccttgcatcaactgaatcggagcctc 126
||||||||| |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 76 ttggtttgtgagcagggattggatcccgccttgcatcaactgaatcggagcctc 129
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 81.8 bits (41), Expect = 2e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 70 ttattggtttgtaagcatggattggctcccgccttgcatcaactgaatcggagcctc 126
|||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct: 77 ttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcggatcctc 133
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 77.8 bits (39), Expect = 3e-14
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 70 ttattggtttgtaagcatggattggctcccgccttgcatcaactgaatcggagcc 124
|||||||||||| |||| |||||| |||||||||||||||||||||||||||||
Sbjct: 73 ttattggtttgtgagcagtgattggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 73.8 bits (37), Expect = 5e-13
Identities = 104/123 (84%), Gaps = 5/123 (4%)
Strand = Plus / Plus
Query: 4 gggctcagattcgcttggtgcagttcggga-ctgattggctgacacaaccacataggtac 62
|||||| |||||||||||||||| |||||| | | ||||||||||| |||| | ||
Sbjct: 9 gggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccacgtg---ac 65
Query: 63 ttttgccttattggtttgtaagc-atggattggctcccgccttgcatcaactgaatcgga 121
|| | |||| ||||||||| ||| | ||||||| ||||||||||||||||||||||||||
Sbjct: 66 ttgtaccttgttggtttgtgagccagggattggatcccgccttgcatcaactgaatcgga 125
Query: 122 gcc 124
|||
Sbjct: 126 gcc 128
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 88 ggattggctcccgccttgcatcaactgaatcggagcc 124
||||||| |||||||||||||||||||||||||||||
Sbjct: 89 ggattggatcccgccttgcatcaactgaatcggagcc 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 gggctcagattcgcttggtgcagttcggga 33
|||||| |||||||||||||||| ||||||
Sbjct: 9 gggctcggattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 65.9 bits (33), Expect = 1e-10
Identities = 101/122 (82%), Gaps = 5/122 (4%)
Strand = Plus / Plus
Query: 4 gggctcagattcgcttggtgcagttcggg-actgattggctgacacaaccacataggtac 62
|||||| |||||||||||||||| ||||| ||||||||||||||||| |||| ||
Sbjct: 9 gggctcggattcgcttggtgcaggtcgggaactgattggctgacacagccac----gtgg 64
Query: 63 ttttgccttattggtttgtaagcatggattggctcccgccttgcatcaactgaatcggag 122
|| | | ||||| ||| |||| |||| |||||||||||||||||||||||||||||
Sbjct: 65 attcccatcattggcatgtgagcagggatctgctcccgccttgcatcaactgaatcggag 124
Query: 123 cc 124
||
Sbjct: 125 cc 126
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 74 tggtttgtaagcatggattggctcccgccttgcatcaactgaatcggag 122
|||||||| |||| ||||||| |||||||||||||||| ||||||||||
Sbjct: 75 tggtttgtgagcagggattggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 60.0 bits (30), Expect = 7e-09
Identities = 93/112 (83%), Gaps = 4/112 (3%)
Strand = Plus / Plus
Query: 11 gattcgcttggtgcagttcggga-ctgattggctgacacaaccacataggtacttttgcc 69
|||||||||||||||| |||||| || ||||||||||||| |||| | |||| ||
Sbjct: 16 gattcgcttggtgcaggtcgggaactaattggctgacacagccacgtg---acttaatcc 72
Query: 70 ttattggtttgtaagcatggattggctcccgccttgcatcaactgaatcgga 121
| ||||| |||| | || | ||||| ||||||||||||||||||||||||||
Sbjct: 73 tcattggcttgtgaccaggaattggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 90 attggctcccgccttgcatcaactgaatcggag 122
||||| |||||||||||||||||||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 7 ctcagattcgcttggtgcagttcggg-actgattggctgacacaaccac 54
|||||||||||||||||||| ||||| ||||||||||||| || |||||
Sbjct: 12 ctcagattcgcttggtgcaggtcgggaactgattggctgataccaccac 60
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 90 attggctcccgccttgcatcaactgaatcggag 122
||||| |||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 90 attggctcccgccttgcatcaactgaatcggag 122
||||| |||||||||||||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 90 attggctcccgccttgcatcaactgaatcggag 122
||||| |||||||||||||||||||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcggag 109
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 tcccgccttgcatcaactgaatcggag 122
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 54.0 bits (27), Expect = 5e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 11 gattcgcttggtgcagttcggg-actgattggctgacac 48
|||||||||||||||| ||||| ||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctgacac 54
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 96 tcccgccttgcatcaactgaatcggag 122
|||||||||||||||||||||||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggag 135
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 90 attggctcccgccttgcatcaactgaatcg 119
||||| ||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 94 gctcccgccttgcatcaactgaatc 118
|||||||||||||||||||||||||
Sbjct: 86 gctcccgccttgcatcaactgaatc 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 11 gattcgcttggtgcagttcggg-actgattggct 43
|||||||||||||||| ||||| |||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 50.1 bits (25), Expect = 7e-06
Identities = 35/37 (94%), Gaps = 1/37 (2%)
Strand = Plus / Plus
Query: 11 gattcgcttggtgcagttcggg-actgattggctgac 46
|||||||||||||||| ||||| ||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattggctgac 52
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 94 gctcccgccttgcatcaactgaatcggag 122
||||| |||||||||||||||||||||||
Sbjct: 86 gctcctgccttgcatcaactgaatcggag 114
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 96 tcccgccttgcatcaactgaatcggagcc 124
||||||||||||||||||||||| |||||
Sbjct: 71 tcccgccttgcatcaactgaatccgagcc 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 ctcagattcgcttggtgcagttcggga 33
|||||||||||||||||||| ||||||
Sbjct: 12 ctcagattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 96 tcccgccttgcatcaactgaatcgga 121
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
