miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 182 bits (92), Expect = 6e-46
Identities = 108/112 (96%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatctatctttggttgagagatgaatgtggaaac 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 aagggaacaagtgaagctgccagcatgatctatctttggttaagagatgaatgtggaaac 62
Query: 61 atattgtttaaaccaaagctaggtcatg-tctgacagcctcactccttcctg 111
|||||| ||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 63 atattgcttaaacccaagctaggtcatgctctgacagcctcactccttcctg 114
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 2 agggaacaagtgaagctgccagcatgatctatctttggtt 41
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctatctttggtt 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 77 agctaggtcatg-tctgacagcctcactccttcct 110
|||||||||||| | ||||||||||||||||||||
Sbjct: 66 agctaggtcatgctgtgacagcctcactccttcct 100
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatctatctttggtt 41
||||||| | |||||||||||||||||||||||||||||||
Sbjct: 3 aagggaaaaggtgaagctgccagcatgatctatctttggtt 43
Score = 54.0 bits (27), Expect = 4e-07
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 77 agctaggtcatg-tctgacagcctcactccttcct 110
|||||||||||| ||||||||||||||||||||||
Sbjct: 75 agctaggtcatgctctgacagcctcactccttcct 109
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 65.9 bits (33), Expect = 1e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatctatctttggtt 41
||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 3 aagggaaaaagtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatctatctttgg 39
||||||| |||||||||||||||||||||||| ||||||
Sbjct: 3 aagggaataagtgaagctgccagcatgatctagctttgg 41
Score = 46.1 bits (23), Expect = 1e-04
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 77 agctaggtcatgtc-tgacagcctcactccttcct 110
|||||||||||| | ||||||||||||||||||||
Sbjct: 81 agctaggtcatgccctgacagcctcactccttcct 115
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatctatctttggtt 41
||||||| | |||||||||||||||||||||| ||||||||
Sbjct: 3 aagggaaaaggtgaagctgccagcatgatctagctttggtt 43
Score = 54.0 bits (27), Expect = 4e-07
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 77 agctaggtcatg-tctgacagcctcactccttcct 110
|||||||||||| ||||||||||||||||||||||
Sbjct: 106 agctaggtcatgctctgacagcctcactccttcct 140
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 ggaacaagtgaagctgccagcatgatcta 32
|||||||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 agtgaagctgccagcatgatctatctttggttg 42
||||||||||||||||||||||| |||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggttg 44
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatcta 32
|||||||| |||||||||||||||||||||||
Sbjct: 3 aagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatcta 32
|||||||| |||||||||||||||||||||||
Sbjct: 3 aagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatcta 32
|||||||| |||||||||||||||||||||||
Sbjct: 3 aagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 aagggaacaagtgaagctgccagcatgatcta 32
|||||||| |||||||||||||||||||||||
Sbjct: 3 aagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 4 ggaacaagtgaagctgccagcatgatctatctttggtt 41
|||| |||||||||||||||||||||||| |||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatctaggtttggtt 43
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 ggaacaagtgaagctgccagcatgatcta 32
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatcta 34
Score = 50.1 bits (25), Expect = 6e-06
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 80 taggtcatg-tctgacagcctcactccttcctg 111
||||||||| |||||||||||||||||||||||
Sbjct: 74 taggtcatgctctgacagcctcactccttcctg 106
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agtgaagctgccagcatgatcta 32
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 agtgaagctgccagcatgatcta 32
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 gtgaagctgccagcatgatcta 32
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
