miRNEST 2.0, an integrative microRNA resource :: BLAST
>54487_sbi-miR396c:pmrd
Length = 162
Score = 93.7 bits (47), Expect = 3e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 3 ttcaagtccatgccatgcctttccacagctttcttgaacttcttctcctcc 53
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1 ttcaagtccatgccatgcctttccacagctttcttgaacttctcctcctcc 51
Score = 85.7 bits (43), Expect = 8e-18
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 101 aagaaggtcaagaaagctgtgggaagaaatgacataacaagga 143
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aagaaggtcaagaaagctgtgggaagaaatgacataacaagga 162
>54869_vvi-miR396b:pmrd
Length = 108
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 13 tgccatgcctttccacagctttcttgaacttcttctcc 50
|||||||| |||||||||||||||||||||||||||||
Sbjct: 4 tgccatgcttttccacagctttcttgaacttcttctcc 41
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 25 ccacagctttcttgaacttc 44
||||||||||||||||||||
Sbjct: 95 ccacagctttcttgaacttc 76
>48947_osa-miR396c:pmrd
Length = 141
Score = 65.9 bits (33), Expect = 8e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 13 tgccatgcctttccacagctttcttgaacttct 45
|||||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaacttct 33
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 100 gaagaaggtcaagaaagctgtgggaagaaatg 131
||||| ||||||||||||||||||||||||||
Sbjct: 107 gaagagggtcaagaaagctgtgggaagaaatg 138
>55078_zma-miR396g:pmrd
Length = 117
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 ctttccacagctttcttgaacttcttct 48
||||||||||||||||||||||||||||
Sbjct: 1 ctttccacagctttcttgaacttcttct 28
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 gaaggtcaagaaagctgtgggaag 126
||||||||||||||||||||||||
Sbjct: 94 gaaggtcaagaaagctgtgggaag 117
>55077_zma-miR396f:pmrd
Length = 166
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 ctttccacagctttcttgaacttcttct 48
||||||||||||||||||||||||||||
Sbjct: 1 ctttccacagctttcttgaacttcttct 28
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 99 cgaagaaggtcaagaaagctgtgggaag 126
||||||||||||||||||| ||||||||
Sbjct: 139 cgaagaaggtcaagaaagccgtgggaag 166
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 16 catgcctttccacagctttcttgaacttctt 46
||||| |||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 16 catgcctttccacagctttcttgaacttctt 46
||||| |||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111
>51738_ptc-miR396e:pmrd
Length = 145
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 catgcctttccacagctttcttgaacttctt 46
||||| |||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttctt 34
>48579_gma-miR396b:pmrd
Length = 126
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 catgcctttccacagctttcttgaacttctt 46
||||| |||||||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaacttctt 44
>48580_gma-miR396c:pmrd
Length = 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 17 atgcctttccacagctttcttgaacttctt 46
|||| |||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttctt 44
>51737_ptc-miR396d:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 catgcctttccacagctttcttgaacttc 44
||||| |||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacttc 32
>48748_mtr-miR396a:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 tttccacagctttcttgaacttctt 46
|||||||||||||||||||||||||
Sbjct: 5 tttccacagctttcttgaacttctt 29
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 17 atgcctttccacagctttcttgaacttc 44
|||| |||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttc 121
>51736_ptc-miR396c:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 13 tgccatgcctttccacagctttcttgaacttc 44
||||||| |||||||||||||||||||||||
Sbjct: 1 tgccatgtttttccacagctttcttgaacttc 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23 ttccacagctttcttgaacttctt 46
|||||| |||||||||||||||||
Sbjct: 94 ttccacggctttcttgaacttctt 71
>54868_vvi-miR396a:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 catgcctttccacagctttcttgaact 42
||||| |||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaact 33
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 22 tttccacagctttcttgaacttc 44
|||||||||||||||||||||||
Sbjct: 94 tttccacagctttcttgaacttc 72
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaacttctt 46
|||||| |||||||||||||||||
Sbjct: 10 ttccacggctttcttgaacttctt 33
>51564_pta-miR396:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tttccacagctttcttgaactt 43
||||||||||||||||||||||
Sbjct: 16 tttccacagctttcttgaactt 37
>47009_ath-miR396b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tttccacagctttcttgaactt 43
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 103 gaaggtcaagaaagctgtgggaagaaatgaca 134
|||| |||||||||||||||||| | ||||||
Sbjct: 104 gaagctcaagaaagctgtgggaaaacatgaca 135
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaactt 43
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaactt 43
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54584_smo-miR396:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 25 ccacagctttcttgaacttc 44
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 catgcctttccacagctttcttgaactt 43
||||| ||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51740_ptc-miR396g:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 16 catgcctttccacagctttcttgaactt 43
||||| ||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23 ttccacagctttcttgaact 42
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
