miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 77.8 bits (39), Expect = 5e-14
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttttg 78
||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 106 ctccattccaaattgtaagtcattttggcttctctaggtacatagcttttg 56
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttcta 63
|||||||||||||||||||| ||||||||||||||
Sbjct: 11 ctccattccaaattgtaagttgttttggcttttcta 46
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 134 aaaagctagaacaacttacaatttggaatggagtgagta 172
|||||| | |||||||||||||||||||||||| |||||
Sbjct: 43 aaaagccaaaacaacttacaatttggaatggagggagta 5
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 147 acttacaatttggaatggagtgagta 172
|||||||||||||||||||| |||||
Sbjct: 87 acttacaatttggaatggagggagta 112
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 67.9 bits (34), Expect = 5e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 32 attccaaattgtaagtcattttggcttttctacatacatagctttt 77
||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct: 131 attccaaattgtaagccattctggcttttctagatacatagctttt 86
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 123 tatgtatctaaaaaagctagaacaacttacaatttggaatggagtgagtag 173
|||||||||| || | ||||||| ||||||||||||||| |||| ||||||
Sbjct: 54 tatgtatctagaataactagaacgacttacaatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 61.9 bits (31), Expect = 3e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttttg 78
|||||| ||||||| |||| |||||||||||| ||| ||||||||||||||
Sbjct: 144 ctccatcccaaattataagacattttggctttactagatacatagcttttg 94
Score = 58.0 bits (29), Expect = 5e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttt 76
|||||||||||||| |||| | |||||||||||||| |||||| |||||
Sbjct: 11 ctccattccaaattataagacgttttggcttttctagatacatggcttt 59
>RF00906;MIR1122;ABXC01000872.1/103457-103600 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 60.0 bits (30), Expect = 1e-08
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagctttt 77
|||||||||||| | |||| |||||||||||||||| |||||| ||||||
Sbjct: 134 ctccattccaaactataagacattttggcttttctaaatacattgctttt 85
Score = 58.0 bits (29), Expect = 5e-08
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 30 ccattccaaattgtaagtcattttggcttttctacatacatagcttttg 78
|||||||||||| |||| | |||||||||||||| |||| |||||||||
Sbjct: 13 ccattccaaattataagacgttttggcttttctagatacgtagcttttg 61
>RF00906;MIR1122;ABXC01000332.1/159241-159126 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 58.0 bits (29), Expect = 5e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatag 72
|||||||||||||| |||| ||||||| |||||||| ||||||||
Sbjct: 106 ctccattccaaattataagacattttgtcttttctagatacatag 62
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttcta 63
|||||||||||| | |||| ||||||||||||||||
Sbjct: 11 ctccattccaaaatataagacattttggcttttcta 46
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttcta 63
||||||||||||||||||| | ||||||||||||||
Sbjct: 11 ctccattccaaattgtaagacgttttggcttttcta 46
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 124 atgtatctaaaaaagctagaacaacttacaatttggaatggagtgagtaga 174
||||||||| |||||| | |||| |||||||||||||| |||| |||||||
Sbjct: 53 atgtatctagaaaagccaaaacatcttacaatttggaacggagggagtaga 3
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagctttt 77
|||| |||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 11 ctccgttccaaattgtaagatgttttggcttttctagatacattgctttt 60
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 52.0 bits (26), Expect = 3e-06
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagctttt 77
|||| ||||||| || ||||| ||||||||||| || |||||||||||||
Sbjct: 142 ctccgttccaaaatgcaagtcgttttggcttttttagatacatagctttt 93
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggctt 58
|||| |||||||||||||||| |||||||||
Sbjct: 11 ctccgttccaaattgtaagtcgttttggctt 41
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 52.0 bits (26), Expect = 3e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttttgttacatatc 87
|||| |||||||||||||| ||||||| |||||| |||||||| ||||| ||| ||||
Sbjct: 11 ctccgttccaaattgtaaggtgttttggcatttctagatacatagattttgctacgtatc 70
Query: 88 ta 89
||
Sbjct: 71 ta 72
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 122 ctatgtatctaaaaaagctagaacaacttacaatttggaatggagtgagta 172
||||||||||| ||| || | |||| |||||||||||||| |||| |||||
Sbjct: 55 ctatgtatctagaaatgccaaaacaccttacaatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01001787.1/79252-79126 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatac 68
|||| |||||||||||||| || ||| ||||||||||||||
Sbjct: 117 ctccgttccaaattgtaagacactttagcttttctacatac 77
>RF00906;MIR1122;ABXC01006511.1/264469-264340 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 50.1 bits (25), Expect = 1e-05
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatag 72
|||| ||| ||||| |||| |||||||||||||||| ||||||||
Sbjct: 120 ctccgttctaaattataagacattttggcttttctagatacatag 76
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 48.1 bits (24), Expect = 5e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacata 71
|||||||||||||| ||| ||||| | ||||||||| |||||||
Sbjct: 131 ctccattccaaattataattcattcttgcttttctatatacata 88
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 48.1 bits (24), Expect = 5e-05
Identities = 58/68 (85%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttttgttacatatc 87
|||| ||||||||| |||| | |||||||||| ||| || ||||||||||| |||| | |
Sbjct: 105 ctccgttccaaattataagacgttttggcttt-ctagattcatagcttttgctacacacc 47
Query: 88 tagatata 95
||||||||
Sbjct: 46 tagatata 39
>RF00906;MIR1122;ABXC01000098.1/126393-126501 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 5e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttttgttacatatc 87
|||||| ||||||| | || | |||||||||||||| |||||| |||||| |||| |||
Sbjct: 11 ctccatcccaaattatgagacgttttggcttttctagatacattacttttgctacacatc 70
Query: 88 taga 91
||||
Sbjct: 71 taga 74
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 43 taagtcattttggcttttctacatacatagcttttg 78
||||||||||||||||| ||| |||||||||||||
Sbjct: 107 taagtcattttggctttcctaggtacatagcttttg 72
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 46.1 bits (23), Expect = 2e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 28 ctccattccaaattgtaagtcattttggcttttctacatacatagcttttg 78
|||||||||||||| |||| | |||||| ||||||| || ||| |||||||
Sbjct: 152 ctccattccaaattataagacgttttgggttttctagattcatggcttttg 102
