miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54646_sof-miR408a:pmrd
Length = 283
Score = 521 bits (263), Expect = e-149
Identities = 263/263 (100%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcact 250
Query: 241 gcctcttccctggctccccaccg 263
|||||||||||||||||||||||
Sbjct: 251 gcctcttccctggctccccaccg 273
>54648_sof-miR408c:pmrd
Length = 286
Score = 484 bits (244), Expect = e-137
Identities = 261/266 (98%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgc 237
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250
Query: 238 actgcctcttccctggctccccaccg 263
||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276
>54650_sof-miR408e:pmrd
Length = 283
Score = 482 bits (243), Expect = e-137
Identities = 258/263 (98%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagacggctgagagctcagctggtgtcctgttgttgcttcctcccctgcact 240
||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 191 cctgacctgagacggatgagagctcagctggtgtcctgttgttgcttacttccctgcact 250
Query: 241 gcctcttccctggctccccaccg 263
| |||||||||||||||||||||
Sbjct: 251 gactcttccctggctccccaccg 273
>54647_sof-miR408b:pmrd
Length = 286
Score = 476 bits (240), Expect = e-135
Identities = 260/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgc 237
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250
Query: 238 actgcctcttccctggctccccaccg 263
||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276
>54649_sof-miR408d:pmrd
Length = 215
Score = 145 bits (73), Expect = 2e-35
Identities = 90/95 (94%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 172 tggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttc 228
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 229 ctcccctgcactgcctcttccctggctccccaccg 263
| |||||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccg 205
Score = 99.6 bits (50), Expect = 1e-21
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 63
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 atttctgtttgcttgctcacaaaacg 113
||||| ||||||||||||||||||||
Sbjct: 69 atttccgtttgcttgctcacaaaacg 94
>54499_sbi-miR408:pmrd
Length = 205
Score = 101 bits (51), Expect = 3e-22
Identities = 142/174 (81%), Gaps = 25/174 (14%)
Strand = Plus / Plus
Query: 88 atttctgtttgcttgctcacaaaacggagggatttgt---gagagttatcaggcagaaag 144
||||| |||||||||| ||||||| ||||||| |||| ||||| ||||||||||| ||
Sbjct: 51 atttccgtttgcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagag 110
Query: 145 aacaaagaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagct 204
|| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 111 aa-------ggtgcctccctggtgaaatggtgatggcctga------------gagagct 151
Query: 205 cagctggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggct 255
|||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 152 cagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 65.9 bits (33), Expect = 1e-11
Identities = 50/55 (90%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 12 acagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 63
||||||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>48975_osa-miR408:pmrd
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 259
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 67.9 bits (34), Expect = 4e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatgaggccatcaaca 49
|||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>55104_zma-miR408:pmrd
Length = 191
Score = 75.8 bits (38), Expect = 2e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaa 51
||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 73.8 bits (37), Expect = 6e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 217 tgttgttgcttcctcccctgcactgcctcttccctggctcc 257
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 135 tgttgttgctccctcccctgcactgcctcttccctggctcc 175
>54690_tae-miR408:pmrd
Length = 187
Score = 63.9 bits (32), Expect = 6e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 216 ctgttgttgcttcctcccctgcactgcctcttccctggctcccc 259
||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 119 ctgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
Score = 56.0 bits (28), Expect = 1e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatgaggccatcaacaaaattt 55
||||||||||||| |||||||| |||||||||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>48428_cpt-miR408:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 227 tcctcccctgcactgcctcttccctggctc 256
||||||| ||||||||||||||||||||||
Sbjct: 63 tcctcccatgcactgcctcttccctggctc 92
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 231 cccctgcactgcctcttccctggct 255
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 235 tgcactgcctcttccctggctccc 258
||||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggctccc 258
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggctc 256
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggctc 256
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggct 255
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggct 255
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggct 255
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 235 tgcactgcctcttccctggct 255
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 235 tgcactgcctcttccctggct 255
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 10 agacagggatgaggcagagcatgggatga 38
||||| |||||||||||||||||| ||||
Sbjct: 85 agacaaggatgaggcagagcatggaatga 57
