miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54647_sof-miR408b:pmrd
Length = 286
Score = 527 bits (266), Expect = e-150
Identities = 266/266 (100%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250
Query: 241 actgcctcttccctggctccccaccg 266
||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276
>54648_sof-miR408c:pmrd
Length = 286
Score = 519 bits (262), Expect = e-148
Identities = 265/266 (99%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 250
Query: 241 actgcctcttccctggctccccaccg 266
||||||||||||||||||||||||||
Sbjct: 251 actgcctcttccctggctccccaccg 276
>54646_sof-miR408a:pmrd
Length = 283
Score = 476 bits (240), Expect = e-135
Identities = 260/266 (97%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttctgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 cctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttcctcccctgc 247
Query: 241 actgcctcttccctggctccccaccg 266
||||||||||||||||||||||||||
Sbjct: 248 actgcctcttccctggctccccaccg 273
>54650_sof-miR408e:pmrd
Length = 283
Score = 452 bits (228), Expect = e-128
Identities = 257/266 (96%), Gaps = 3/266 (1%)
Strand = Plus / Plus
Query: 1 tatggttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 11 tatggttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaat 70
Query: 61 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ttctgtcctccgctaggccgctactgcatttatgtttgcttgctcacaaaacggagggat 130
Query: 121 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ttgtgagagttatcaggcagaaagaacaaagaaggtgcctccctggtgaagtggtgatgg 190
Query: 181 cctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttcctcccctgc 240
|||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 191 cctgacctgagacggatgagagctcagctggtgtcc---tgttgttgcttacttccctgc 247
Query: 241 actgcctcttccctggctccccaccg 266
|||| |||||||||||||||||||||
Sbjct: 248 actgactcttccctggctccccaccg 273
>54649_sof-miR408d:pmrd
Length = 215
Score = 180 bits (91), Expect = 4e-46
Identities = 94/95 (98%)
Strand = Plus / Plus
Query: 172 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 170
Query: 232 ctcccctgcactgcctcttccctggctccccaccg 266
| |||||||||||||||||||||||||||||||||
Sbjct: 171 cacccctgcactgcctcttccctggctccccaccg 205
Score = 107 bits (54), Expect = 4e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94 gtttgcttgctcacaaaacg 113
||||||||||||||||||||
Sbjct: 75 gtttgcttgctcacaaaacg 94
>54499_sbi-miR408:pmrd
Length = 205
Score = 127 bits (64), Expect = 5e-30
Identities = 96/109 (88%), Gaps = 12/109 (11%)
Strand = Plus / Plus
Query: 150 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 209
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 109 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 156
Query: 210 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 258
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 73.8 bits (37), Expect = 6e-14
Identities = 51/55 (92%), Gaps = 3/55 (5%)
Strand = Plus / Plus
Query: 12 acagggatgaggcagagcatgggatggggccat---caacaaaatttccaatttc 63
||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttc 55
>55104_zma-miR408:pmrd
Length = 191
Score = 83.8 bits (42), Expect = 6e-17
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaacaaa 51
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 219 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 260
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
>48975_osa-miR408:pmrd
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 220 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 262
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaaca 49
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>54690_tae-miR408:pmrd
Length = 187
Score = 61.9 bits (31), Expect = 2e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 220 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 262
|||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
Score = 48.1 bits (24), Expect = 3e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaacaaaattt 55
||||||||||||| |||||||| |||||| ||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>48428_cpt-miR408:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 230 tcctcccctgcactgcctcttccctggctc 259
||||||| ||||||||||||||||||||||
Sbjct: 63 tcctcccatgcactgcctcttccctggctc 92
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 234 cccctgcactgcctcttccctggct 258
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 238 tgcactgcctcttccctggctccc 261
||||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctccc 261
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctc 259
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggctc 259
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 238 tgcactgcctcttccctggct 258
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 40.1 bits (20), Expect = 9e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 agacagggatgaggcagagcatgg 33
||||| ||||||||||||||||||
Sbjct: 85 agacaaggatgaggcagagcatgg 62
