miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01000088.1/175772-175619 4558:Sorghum bicolor
(sorghum)
Length = 154
Score = 71.9 bits (36), Expect = 2e-12
Identities = 46/48 (95%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 16 tccctccattccaaattataagacggttttgacttttctagatacatg 63
|||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 8 tccctccattccaaattataagac-gttttggcttttctagatacatg 54
Score = 54.0 bits (27), Expect = 5e-07
Identities = 46/51 (90%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 12 atactccctccattccaaattataagacggttttgacttttctagatacat 62
||||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 151 atactccctccatcccaaattataagac-attttggctttactagatacat 102
>RF00906;MIR1122;ABXC01000332.1/159241-159126 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 67.9 bits (34), Expect = 3e-11
Identities = 47/50 (94%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 112 tactccctccattccaaattataagac-attttgtcttttctagatacat 64
Score = 48.1 bits (24), Expect = 3e-05
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 16 tccctccattccaaattataagacggttttgacttttctagata 59
||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 8 tccctccattccaaaatataagac-attttggcttttctagata 50
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 63.9 bits (32), Expect = 5e-10
Identities = 48/52 (92%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 12 atactccctccattccaaattataagacggttttgacttttctagatacatg 63
|||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct: 159 atactccctccattccaaattataagac-gttttgggttttctagattcatg 109
Score = 60.0 bits (30), Expect = 8e-09
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||||||||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct: 5 tactccctccgttccacattataagac-gttttggcttttctagatacat 53
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 61.9 bits (31), Expect = 2e-09
Identities = 47/51 (92%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 12 atactccctccattccaaattataagacggttttgacttttctagatacat 62
||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 4 atactccctccgctccaaattataagaca-ttttgacttttctagatacat 53
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagac 39
|||||||||||||||||||||||||||
Sbjct: 149 tactccctccattccaaattataagac 123
>RF00906;MIR1122;ABXC01000098.1/126393-126501 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 60.0 bits (30), Expect = 8e-09
Identities = 46/50 (92%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||||||||||| ||||||||| |||| |||||| |||||||||||||||
Sbjct: 5 tactccctccatcccaaattatgagac-gttttggcttttctagatacat 53
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagac 39
|||||||||||| ||||||||||||||
Sbjct: 105 tactccctccatcccaaattataagac 79
>RF00906;MIR1122;ABXC01000872.1/103457-103600 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 58.0 bits (29), Expect = 3e-08
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 16 tccctccattccaaattataagacggttttgacttttctagatac 60
|||| ||||||||||||||||||| |||||| |||||||||||||
Sbjct: 8 tccccccattccaaattataagac-gttttggcttttctagatac 51
Score = 52.0 bits (26), Expect = 2e-06
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||||||||||||||||| |||||||| ||||| |||||||| ||||||
Sbjct: 140 tactccctccattccaaactataagac-attttggcttttctaaatacat 92
>RF00906;MIR1122;ABXC01001482.1/21413-21536 4558:Sorghum bicolor
(sorghum)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 12 atactccctccattccaaattataagacggttttgacttttcta 55
||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct: 4 atactccctccattccaaattgtaagac-gttttggcttttcta 46
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataaga 38
|||||| |||||||||||||||||||
Sbjct: 120 tactccatccattccaaattataaga 95
>RF00906;MIR1122;ABXC01000255.1/62068-61965 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataagacg 40
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccattccaaattataagacg 32
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 45/50 (90%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||||||||| ||||||||| ||||| | ||||| |||||||||||||||
Sbjct: 5 tactccctccgttccaaattgtaagatg-ttttggcttttctagatacat 53
>RF00906;MIR1122;ABXC01006511.1/264469-264340 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 5 tactccctccattccaaattataag 29
Score = 44.1 bits (22), Expect = 5e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||| ||||| ||| |||||||||||| ||||| |||||||||||||||
Sbjct: 126 tacttcctccgttctaaattataagaca-ttttggcttttctagatacat 78
>RF00906;MIR1122;ABXC01001279.1/17843-17947 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 101 tactccctccattccaaattataag 77
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacg 40
|||||||||| |||||||||||||||||
Sbjct: 105 tactccctccgttccaaattataagacg 78
Score = 46.1 bits (23), Expect = 1e-04
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagata 59
||||| |||| |||||||||||||||| |||||| |||||| |||||
Sbjct: 5 tactctctccgttccaaattataagac-gttttggcttttccagata 50
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataa 36
||||||||||||||||||||||||
Sbjct: 137 tactccctccattccaaattataa 114
Score = 46.1 bits (23), Expect = 1e-04
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 12 atactccctccattccaaattataagacggttttgacttttctagat 58
||||||||||| |||||||||||||| | ||| || |||||||||||
Sbjct: 4 atactccctccgttccaaattataagtc-gttctggcttttctagat 49
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacg 40
|||||||||| |||||||||||||||||
Sbjct: 111 tactccctccgttccaaattataagacg 84
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagac 39
|||||||||| ||||||||||||||||
Sbjct: 144 tactccctccgttccaaattataagac 118
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 catactccctccattccaaattataag 37
|||||||||||| ||||||||||||||
Sbjct: 3 catactccctccgttccaaattataag 29
>RF00906;MIR1122;ABXC01002870.1/113864-113706 4558:Sorghum bicolor
(sorghum)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacatg 63
||||||||| || ||||||||||||| |||||| ||||||||||| ||||
Sbjct: 5 tactccctctgtttcaaattataagac-gttttggcttttctagattcatg 54
Score = 44.1 bits (22), Expect = 5e-04
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||||||||| || |||| ||||||||| ||| | |||||||||||||||
Sbjct: 155 tactccctccgtttcaaactataagacgttttag-cttttctagatacat 107
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 62 tgctatgctcttagatatacagtctgtttagatacatagtaa 103
|||||||| ||||||||| || | ||| ||||||||||||||
Sbjct: 59 tgctatgcacttagatatgcactgtgtctagatacatagtaa 100
Score = 44.1 bits (22), Expect = 5e-04
Identities = 45/50 (90%), Gaps = 2/50 (4%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataagacggttttgacttttctagatacat 62
|||||||||| ||||||| ||||||||| ||||| |||| ||||||||||
Sbjct: 153 tactccctccgttccaaactataagacg-ttttggcttt-ctagatacat 106
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccctccattccaaattataag 37
||||||||||| ||||||||||||||
Sbjct: 4 atactccctccgttccaaattataag 29
>RF00906;MIR1122;ABXC01002486.1/98513-98357 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccctccattccaaattataag 37
||||||||||||||| ||||||||||
Sbjct: 154 atactccctccattctaaattataag 129
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccctccattccaaattataag 37
||||||||||||||||||||| ||||
Sbjct: 113 atactccctccattccaaattgtaag 88
>RF00906;MIR1122;AAAA02034091.1/42794-42914 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 13 tactccctccattccaaattataaga 38
|||||||||||||||||| |||||||
Sbjct: 117 tactccctccattccaaaatataaga 92
